RNA id: TU122272


Basic Information

Item Value
RNA id TU122272
length 1319
lncRNA type sense_over
GC content 0.43
exon number 3
gene id AMCG00015456
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9851672 ~ 9862136 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAGTGAGCGagagcagccaatcagcagaGCTCAACTCAGACAAGTCCCACCCATCATCTGGAGCTGAAGACTGCCAATCAAGGGACCAATCACCTGTGACCAAGAAGAACAGCCTCCCATCGCACTGATGATTCCAGTCCACTGCAGCCCAGTTCAGTCCCAGACCCTGTCCACTCAGGTCAACTACTGTCCCAGTTCAGTCCACCCGACTCCACTCCACTGCAGTGCACCAGAGAGAGTGCcttactgtactgcactgtcaGAGAGAGAGCGTGTCTGCACTGTACTGGAGACAATGCCTTATATACCGTTACCACTGGCCTTGTTTAGGTGCACTTCGGCGTGGGCTGTAACCGTACACATAAACTTTGCTGCCTGCGTTTCCATTCATTGTCTTgaggtacagctgccctaggaaaTGAAAGTGAGGCACGAAAGGTCAAAATGCATTCTGGGCCACTCGTCATTTTGGGATTTAGTGTTAaaaaactggaggctgaaatacctctAACATTAAATTGTCCTGCAGGGCACTGTGCCAAAGGTCCAACCTGATTGTACTGGATTGAGTAGCATCGCATCCTGATGTCTCAGCTctaataaattatgtgtttatctccaagatggctgacctgtttattattattattattattatcatcatcatcatccagcACGCGCCTTTATTCAAGTTGATTGGCAGGAGTtgtacacactctctctctgtgtcactgaAGTCACCAGCACTGCTCTCTGCCCCGCTGCCTCTTGGCCCCAGTTCTTCCACAGCTGAAGTGAGGAATGTGATCAACAAGACTGTATGGTGCTCAAGTGTGTATTGTAGATCAATACTGGATTTTGCTAATTTAACCTGTAttataactataatatatacagctcaTCTACAACCTGACAAAATGTTCACCATTGGTCAACTGTACAACGGaagggtgtagactttctataggtgctgtatatattaaattcagatttgtatttttaatatatattttttccacaataaaatgttttccccttaacagtgtggagttgGTGTGTAGAAAAGTGGGGGAAATCCTCATTGAAATCATGAAACTCTCAGGTACtgacactaaaaaaaaaaagttcaatagGCACTGTATACAGCAATAGGCTCATTTCGCTTTGTTaacattgtatattaattaCGGGGTTGTTCATTTAACATTATTCTTACATTTGCATATGTGTATAATGTGCACACACAcgaattatattaattatcgTTCTCTACATCGTATATACATCTAAAAATGGCACGCATCGTGCGCAGATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122221 lncRNA upstream 98410 9759572 ~ 9760688 (+) True G98025
TU122192 lncRNA upstream 153062 9705724 ~ 9706036 (+) True G97999
TU122191 lncRNA upstream 155989 9702836 ~ 9703109 (+) True G97998
TU122181 lncRNA upstream 201232 9655468 ~ 9657866 (+) True G97989
TU122162 lncRNA upstream 227206 9629139 ~ 9631892 (+) True AMCG00015445
TU122278 lncRNA downstream 16323 9878459 ~ 9879136 (+) True G98060
TU122320 lncRNA downstream 139078 10001214 ~ 10012888 (+) False AMCG00015475
TU122474 lncRNA downstream 334491 10196627 ~ 10197404 (+) True G98195
TU122489 lncRNA downstream 356418 10218554 ~ 10222496 (+) True AMCG00015492
TU122548 lncRNA downstream 461122 10323258 ~ 10323970 (+) True G98255
AMCG00015457 mRNA upstream 16690 9824915 ~ 9842408 (+) True AMCG00015457
AMCG00015455 mRNA upstream 39188 9816131 ~ 9819910 (+) True AMCG00015455
AMCG00015461 mRNA upstream 48670 9772574 ~ 9810428 (+) True AMCG00015461
AMCG00015450 mRNA upstream 156326 9697300 ~ 9702772 (+) True AMCG00015450
AMCG00015443 mRNA upstream 214870 9643122 ~ 9644228 (+) True AMCG00015443
AMCG00015458 mRNA downstream 1612 9863748 ~ 9868818 (+) True AMCG00015458
AMCG00015459 mRNA downstream 7006 9869142 ~ 9872454 (+) True AMCG00015459
AMCG00015467 mRNA downstream 49143 9911279 ~ 9915357 (+) True AMCG00015467
AMCG00015465 mRNA downstream 58850 9920986 ~ 9925429 (+) True AMCG00015465
AMCG00015464 mRNA downstream 67479 9929615 ~ 9930846 (+) True AMCG00015464
TU122222 other upstream 100668 9757073 ~ 9758430 (+) False G98025
TU122193 other upstream 148369 9706097 ~ 9710729 (+) True G98000
TU121801 other upstream 826313 9029717 ~ 9032785 (+) False AMCG00015407
TU121759 other upstream 905423 8951793 ~ 8953675 (+) False AMCG00015396
TU122294 other downstream 67456 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 223292 10085428 ~ 10086512 (+) False G98093
TU122336 other downstream 223292 10085428 ~ 10086512 (+) True G98093
TU122488 other downstream 350865 10213001 ~ 10217201 (+) False AMCG00015492
TU122544 other downstream 454772 10316908 ~ 10317325 (+) True G98251

Expression Profile