RNA id: AMCG00015461


Basic Information

Item Value
RNA id AMCG00015461
length 1293
RNA type mRNA
GC content 0.52
exon number 11
gene id AMCG00015461
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9772574 ~ 9810428 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTGCGGAGCTCCACCGGAGATAGTTTGCCCACACTTCCAGAAGCAAACAGAAGAACAGATGTTCCAGCTCGTCAACTGCATGTCAATTTTGAACTGCCCCGGGATGCAGCTCCTCTTCGACTTGGACGTTGCTGGCATAGCAGCACTACTACCAAATAAGTCTATTTCCCCACTCGTCAACCAGATTTCAATGAATCTCTCTCACCCCAACATTGTGCGCTTCATTGCTGCAGCCAAGACTGAGAGATTTGTACTTTTGGTTTATGAATACATCCATGGTGCTGACCTGCATATTGTCCTCAAAGGAGACTACCTCTCAATACAGCTGACCAGAGAAGACAAGAGCCACATCGCTCTGGACCTGGCCATGGCAGTGGAGTACATTCACTCTAAACACATCATCCACCAGGACATAAAGCCAGCCAATGTGATGctcGAAGCAAAATCCAAGAAGGCCTACCTCATTGACTGGGGTATTGCTCATGTCAAAGACACAATATTTGTAATGGGAGGACGCATTGTACTCCGACTTCAAGGTGGCACACCATATTACATGGCCCCCGAGTGCTTACTGACCCAGTCTGAGGCCACGCTGCAGTCGGACGTGTGGTCCCTGGGAATTACCTTCATACAGTTATATACAAACGAGTTACCATGGGGTACAAACAACCTTCAAGTGATGCCCCTGCTCATGCAACTGAAGAGGCCTCCCCCTGGTTTAGGCCGTCTTAGCCAAACTGACAGAAAAGTAATTGAACCCATGCTGAGGTACACACCAGCGGCACGACTATCCGCGGAGGAGATTTACAGTGTGGAGCGGGTTGAGGCAGCAGCAATCTGTTTGGGATCGTCCATTGCCAGGCACttaggaggagaggagagacgcAACTCTGCACTGCAGCTGGGGGGAGGGGCGTTGCTCCGGGCCACGCTGTATGACACTTCCTGCCCCACCTTCCGCTCTGCCTCCCGCAGGATCTTGCTCACGGGCAGCGGGTCATACTTGTTGTCCAGCTTGTTGTTGATGTGGTACCGGTCACTGCCCACCACCGTCCGCAAGGGATCCTTCTTGATCACTGCCTTCTCGCACATCATGGACATTATACTGTACGCCCCCGCCCCTGCCAACTCGCCTGGAGGGAGGAATAGGAGgtggggagggagaaaaaagaagGAGAGGGACGAATGGAGGAGAAGCCAAGCAAGAAGGACAAATATACCAGCTATCTACTACATGTTCGTTCCATATGGGTCTGTACTCACCAAGAAGGGGGCCATGCTTGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122221 lncRNA upstream 11886 9759572 ~ 9760688 (+) True G98025
TU122192 lncRNA upstream 66538 9705724 ~ 9706036 (+) True G97999
TU122191 lncRNA upstream 69465 9702836 ~ 9703109 (+) True G97998
TU122181 lncRNA upstream 114708 9655468 ~ 9657866 (+) True G97989
TU122162 lncRNA upstream 140682 9629139 ~ 9631892 (+) True AMCG00015445
TU122272 lncRNA downstream 48670 9859098 ~ 9862136 (+) False AMCG00015456
TU122278 lncRNA downstream 68031 9878459 ~ 9879136 (+) True G98060
TU122320 lncRNA downstream 190786 10001214 ~ 10012888 (+) False AMCG00015475
TU122474 lncRNA downstream 386199 10196627 ~ 10197404 (+) True G98195
TU122489 lncRNA downstream 408126 10218554 ~ 10222496 (+) True AMCG00015492
AMCG00015450 mRNA upstream 69802 9697300 ~ 9702772 (+) True AMCG00015450
AMCG00015443 mRNA upstream 128346 9643122 ~ 9644228 (+) True AMCG00015443
AMCG00015445 mRNA upstream 142788 9624589 ~ 9629786 (+) False AMCG00015445
AMCG00015444 mRNA upstream 147992 9621732 ~ 9624582 (+) True AMCG00015444
AMCG00015435 mRNA upstream 187037 9572868 ~ 9585537 (+) True AMCG00015435
AMCG00015455 mRNA downstream 5703 9816131 ~ 9819910 (+) True AMCG00015455
AMCG00015457 mRNA downstream 14487 9824915 ~ 9842408 (+) True AMCG00015457
AMCG00015456 mRNA downstream 41244 9851672 ~ 9861488 (+) True AMCG00015456
AMCG00015458 mRNA downstream 53320 9863748 ~ 9868818 (+) True AMCG00015458
AMCG00015459 mRNA downstream 58714 9869142 ~ 9872454 (+) True AMCG00015459
TU122222 other upstream 14144 9757073 ~ 9758430 (+) False G98025
TU122193 other upstream 61845 9706097 ~ 9710729 (+) True G98000
TU121801 other upstream 739789 9029717 ~ 9032785 (+) False AMCG00015407
TU121758 other upstream 818899 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 818899 8951793 ~ 8953675 (+) False AMCG00015396
TU122266 other downstream 5290 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 119164 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 275000 10085428 ~ 10086512 (+) False G98093
TU122336 other downstream 275000 10085428 ~ 10086512 (+) True G98093
TU122488 other downstream 402573 10213001 ~ 10217201 (+) False AMCG00015492

Expression Profile