RNA id: TU122294



Basic Information


Item Value
RNA id TU122294
length 629
RNA type TUCP
GC content 0.56
exon number 3
gene id AMCG00015464
representative False

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9929592 ~ 9930846 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CATTATCCTGCGACTCGTCCTTTATCTCCCTGCATCCGGCGACTTCCCGGCAGATTGACACTGAGAGCTCACCCACAATGTCTGCGCTTGTCCGAGGAATCCTGGCCGCCCGGTCCGCTCCGGCCCTGCGAGGCCACGCCGTCGTCCAGCGCGCTAGCCTGTATACCAAGCCGCCCAAGGAGAATATCGGTGCCGTTGAAACTGCCATCGGATTGGGACTCATGTCTATTGCGATCCTGGGCCCGTCTGGCTGGGTTCTGGCCAACCTGGAGAATTACAAGAGGCGTGACTGAGGACCTGCCCCTCGACCTCCAATACCTACCCACCCTTACCTGGGACCAGCCCTCTTCCTCCATCTACCTCTCCTCCAGACCGATGTTTACTCCTCTCCAGTCTCCGGACGCCTCTCCTGCAGGACCACAAAATCGGACGCACACGCTTCGCTTCCTCTGGAGGGGGGGGTGAATTTTTCTTCGCTTGCGATGTTTTCTTTTGCTCCTGATGAGCCTGTTACAATAAAGCCTATTTAAAAAGTGCACGGGATCTCGCCGTCTCTGGGTGAGGGTGTGTTGGggagtgtgggagagagagagagagagagagtgagagtttatatatatatatatata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU122278 lncRNA upstream 50456 9878459 ~ 9879136 (+) True G98060
TU122272 lncRNA upstream 67456 9859098 ~ 9862136 (+) False AMCG00015456
TU122221 lncRNA upstream 168904 9759572 ~ 9760688 (+) True G98025
TU122192 lncRNA upstream 223556 9705724 ~ 9706036 (+) True G97999
TU122191 lncRNA upstream 226483 9702836 ~ 9703109 (+) True G97998
TU122320 lncRNA downstream 70410 10001214 ~ 10012888 (+) False AMCG00015475
TU122474 lncRNA downstream 265823 10196627 ~ 10197404 (+) True G98195
TU122489 lncRNA downstream 287750 10218554 ~ 10222496 (+) True AMCG00015492
TU122548 lncRNA downstream 392454 10323258 ~ 10323970 (+) True G98255
TU122533 lncRNA downstream 408304 10339108 ~ 10340845 (+) True G98244
AMCG00015465 mRNA upstream 4163 9920986 ~ 9925429 (+) True AMCG00015465
AMCG00015467 mRNA upstream 14235 9911279 ~ 9915357 (+) True AMCG00015467
AMCG00015459 mRNA upstream 57138 9869142 ~ 9872454 (+) True AMCG00015459
AMCG00015458 mRNA upstream 60774 9863748 ~ 9868818 (+) True AMCG00015458
AMCG00015456 mRNA upstream 68104 9851672 ~ 9861488 (+) True AMCG00015456
AMCG00015466 mRNA downstream 4339 9935143 ~ 9943673 (+) True AMCG00015466
AMCG00015462 mRNA downstream 15030 9945834 ~ 9947066 (+) True AMCG00015462
AMCG00015463 mRNA downstream 30722 9961526 ~ 9965454 (+) True AMCG00015463
AMCG00015472 mRNA downstream 51998 9982802 ~ 9986495 (+) True AMCG00015472
AMCG00015474 mRNA downstream 57848 9988652 ~ 9996158 (+) True AMCG00015474
TU122266 other upstream 57587 9815718 ~ 9872005 (+) True G98053
TU122222 other upstream 171162 9757073 ~ 9758430 (+) False G98025
TU122193 other upstream 218863 9706097 ~ 9710729 (+) True G98000
TU121801 other upstream 896807 9029717 ~ 9032785 (+) False AMCG00015407
TU121759 other upstream 975917 8951793 ~ 8953675 (+) False AMCG00015396
TU122332 other downstream 154624 10085428 ~ 10086512 (+) False G98093
TU122336 other downstream 154624 10085428 ~ 10086512 (+) True G98093
TU122488 other downstream 282197 10213001 ~ 10217201 (+) False AMCG00015492
TU122544 other downstream 386104 10316908 ~ 10317325 (+) True G98251
TU122613 other downstream 517362 10448166 ~ 10450663 (+) True G98302

Expression Profile