RNA id: AMCG00015467


Basic Information

Item Value
RNA id AMCG00015467
length 1857
RNA type mRNA
GC content 0.63
exon number 3
gene id AMCG00015467
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9911279 ~ 9915357 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGACCTCCATCACTCAGTGGTGCCATTTGGGGGGGCGAGCACCCCTCCATCCGTTGAACACCAAGAGGAGCGAGGAGCCAAGGCCAGCCTCGCACCCGCGCCAGGGAGACCCGGCGGCCAGCGCCACACCGCCATACTGCAGGACACAGATGGCTGGGGGTGGCATGGAgcccctggtcctggagagagagtTGTCCGCATCGCACACTGCAGGGGGAATGGACCTGGGCCAGGGGGGGACGGACCCGGAGCAGGATGGCACCCAGCTGTCGCACTCCCTCCTGTCCCTGCAGCACCTTCTCAGCTTCTGGAGGGGGGGTCCTCACCATGATtgggagcaggagagaggggtGAGCTGCGTCACTGGAGAAGGGGCCGATGACATCCCACTGTGGGCAGCCGGCTCCCTGTGTCCCCAAACAGAGCTGTCAGGGCTAGGGGGGGGCACAGCTGAGCCTGCAGGGCTGATGGCGGTTCCTTGCACTGGCTGCCAGGTGGGGGCTCATCCCAGCCGCAGCTCGGAGACTGAGCAAGGGCTCGGGTCCCAGTCTGCAGAGCTGGAGTGGCAGCTGCCCAGACTGGAGGTGGTCTCTCTGCAGGGGAGCAGCCTGCAGGCCAGACCGCACTCTGGGCACAGGGACACTGGGATGCTAGGCAGTGGGCAAGGGGAGAGCCTGGGTTGGGCTGCCTCCTCACTGCAGTCAGGGAACCGGGGGCCCGGGGGGGACAGGGTCCAGAGCCACACTGGCCTCCCCCTGCAGGGCCCAGTCAGCAAGGAGCCCCTGCTGTACACAGAGACCGAGCAGCCAGACTTTGCCCCTGAGCACGTGTGTGTGAAGCAGGAGAACCCAGATTGGGAGGAGAGACAGGAGTGTGGAGGAGACTGTCCCCAGATAAAGACTGAGTGTGAACTGGAGCCTGTGGACAGCAAGGACCCCCTGCTACACTGGGAGATGGACTCTGGACAGGGCAGCACTGAGCAAACAGACCAGATTAAAACAGAGGAGCCAGACTTTGCTGCTGAGCCCAAGTCTGGCAGCAGTGAGCAGACTGGACTCCAGACTTGCCAGATAAAAACCGAGCAAGACTTTAAACCCGAGCCCATGTGTGTGAAGCAGGAGCGCTCAGACTGGGCCGCTTGTTCGCAACCAGAGAGACAGGAGTGTGGAGGACACTGTCCCCAGATAAAGACTGAGAGAGAGCAAGTCAAGTTGGAGCCTCTGGACACCAAGGAGCCCCTGCCGTCCTGGGAGACGGGCTCTGGACAGGGCAGCAGCAGCCAGCGGACTGGCCAACACCTCAGCAGTATGGTCAGCCCCCTGAAGCCATCCCACTATCCACCCACCCTGCCCACACCCACTGTAACCTTGCCTACCCCTGCCCCATCCTCCCAAGCCCCACCTGCTCACAGGCCCCaggtgctccttgtgctccccCTGTCCTCCACCATACTGGTCAGTACCACCTCCCAGCAACCCCCTGTCCAGCAACCCCCAGTCCACACCCTCCCTGATCATCAGCCCCTtgccccccctctctctacCCGGCAGTCCTCAGTCAAGTCGTCCCCGGACTTCCAGCCCATCACCATCTGCATGGGCTGCAACCAGGACTTCGGCTCGACCCCAGCCCTGAGGGAGCACATGCACTGTGGAGACGAGAGAGCGCCAAAGCCCTGGAAGTGCTGCAATTGCGCCCGGCCATTCAAGACTGAGGGTCCGCTGTTGAACCACATGAACATCCACGGCTCGGACACTCACAACTGCCCAGAGTGCGGCCGCAAGTTCGTGTCGCCCCACGACCTTCTCATCCACTCACAGATCCACTCGCTGTTATGTTTCACAGGAATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122278 lncRNA upstream 32143 9878459 ~ 9879136 (+) True G98060
TU122272 lncRNA upstream 49143 9859098 ~ 9862136 (+) False AMCG00015456
TU122221 lncRNA upstream 150591 9759572 ~ 9760688 (+) True G98025
TU122192 lncRNA upstream 205243 9705724 ~ 9706036 (+) True G97999
TU122191 lncRNA upstream 208170 9702836 ~ 9703109 (+) True G97998
TU122320 lncRNA downstream 85857 10001214 ~ 10012888 (+) False AMCG00015475
TU122474 lncRNA downstream 281270 10196627 ~ 10197404 (+) True G98195
TU122489 lncRNA downstream 303197 10218554 ~ 10222496 (+) True AMCG00015492
TU122548 lncRNA downstream 407901 10323258 ~ 10323970 (+) True G98255
TU122533 lncRNA downstream 423751 10339108 ~ 10340845 (+) True G98244
AMCG00015459 mRNA upstream 38825 9869142 ~ 9872454 (+) True AMCG00015459
AMCG00015458 mRNA upstream 42461 9863748 ~ 9868818 (+) True AMCG00015458
AMCG00015456 mRNA upstream 49791 9851672 ~ 9861488 (+) True AMCG00015456
AMCG00015457 mRNA upstream 68871 9824915 ~ 9842408 (+) True AMCG00015457
AMCG00015455 mRNA upstream 91369 9816131 ~ 9819910 (+) True AMCG00015455
AMCG00015465 mRNA downstream 5629 9920986 ~ 9925429 (+) True AMCG00015465
AMCG00015464 mRNA downstream 14258 9929615 ~ 9930846 (+) True AMCG00015464
AMCG00015466 mRNA downstream 19786 9935143 ~ 9943673 (+) True AMCG00015466
AMCG00015462 mRNA downstream 30477 9945834 ~ 9947066 (+) True AMCG00015462
AMCG00015463 mRNA downstream 46169 9961526 ~ 9965454 (+) True AMCG00015463
TU122266 other upstream 39274 9815718 ~ 9872005 (+) True G98053
TU122222 other upstream 152849 9757073 ~ 9758430 (+) False G98025
TU122193 other upstream 200550 9706097 ~ 9710729 (+) True G98000
TU121801 other upstream 878494 9029717 ~ 9032785 (+) False AMCG00015407
TU121759 other upstream 957604 8951793 ~ 8953675 (+) False AMCG00015396
TU122294 other downstream 14235 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 170071 10085428 ~ 10086512 (+) False G98093
TU122336 other downstream 170071 10085428 ~ 10086512 (+) True G98093
TU122488 other downstream 297644 10213001 ~ 10217201 (+) False AMCG00015492
TU122544 other downstream 401551 10316908 ~ 10317325 (+) True G98251

Expression Profile