RNA id: TU122440


Basic Information

Item Value
RNA id TU122440
length 314
lncRNA type sense_over
GC content 0.62
exon number 2
gene id AMCG00015479
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10018764 ~ 10026019 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacccatgttCCCTCCCAGGCGAGGTACCTGTTTGTAGAGCCACAGCAGGGAGCAGGTGACAGTGATGTCAGCCAGGCTGACTCTCTCCCCCACCAGGAAGGTGCGCGTCTTCAGGTGCTCGTTCAGCACACCCAGCACCCGCTTCACCTCTTCCTTCGCCTGCTCCGTGGCTGCTTGTTGTATTGCATGATGCCCAGAGTGGGGAAGACCCAGGTGCTGGCAGGGGGGATGATCTCGGAGTCGGCGAAGCTCATCCACTGCAGGACCTGGGCTGAGGCCTGCTTGCTGCTGCCCCTCAGAGCATCAGAGCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122394 lncRNA downstream 895 9930341 ~ 10017869 (-) False G98126
TU122412 lncRNA downstream 32136 9974041 ~ 9986628 (-) True AMCG00015468
TU122408 lncRNA downstream 80442 9937076 ~ 9938322 (-) True G98138
TU122395 lncRNA downstream 87977 9929562 ~ 9930787 (-) True G98126
TU122391 lncRNA downstream 139624 9878459 ~ 9879140 (-) False AMCG00015471
TU122438 lncRNA upstream 4559 10026114 ~ 10075893 (-) True G98163
TU122493 lncRNA upstream 85678 10107233 ~ 10165397 (-) True G98211
TU122498 lncRNA upstream 151546 10173101 ~ 10222525 (-) True G98216
TU122570 lncRNA upstream 266471 10288026 ~ 10340868 (-) True G98269
TU122588 lncRNA upstream 356730 10378285 ~ 10380049 (-) True AMCG00015501
AMCG00015478 mRNA downstream 14504 10003136 ~ 10004260 (-) True AMCG00015478
AMCG00015477 mRNA downstream 15676 9997063 ~ 10003088 (-) True AMCG00015477
AMCG00015468 mRNA downstream 39139 9973956 ~ 9979625 (-) False AMCG00015468
AMCG00015470 mRNA downstream 109330 9899672 ~ 9909434 (-) True AMCG00015470
AMCG00015471 mRNA downstream 122252 9879060 ~ 9896512 (-) True AMCG00015471
AMCG00015486 mRNA upstream 62233 10083788 ~ 10100629 (-) True AMCG00015486
AMCG00015485 mRNA upstream 88840 10110395 ~ 10111184 (-) True AMCG00015485
AMCG00015487 mRNA upstream 100444 10121999 ~ 10128211 (-) True AMCG00015487
AMCG00015497 mRNA upstream 167287 10188842 ~ 10193858 (-) True AMCG00015497
AMCG00015493 mRNA upstream 174009 10195564 ~ 10198602 (-) True AMCG00015493
TU122362 other downstream 179254 9837502 ~ 9839510 (-) True G98094
TU122072 other downstream 663032 9353217 ~ 9355732 (-) True G97897
TU122046 other downstream 840097 9176218 ~ 9178667 (-) False AMCG00015419
TU122010 other downstream 978623 9038614 ~ 9040141 (-) True AMCG00015409
TU121992 other downstream 1058620 8956415 ~ 8960144 (-) False AMCG00015400
TU122506 other upstream 168866 10190421 ~ 10192287 (-) False AMCG00015497
TU122509 other upstream 175063 10196618 ~ 10198654 (-) False AMCG00015493
TU122510 other upstream 175063 10196618 ~ 10198654 (-) False AMCG00015493
TU122511 other upstream 175063 10196618 ~ 10198654 (-) False AMCG00015493
TU122512 other upstream 175063 10196618 ~ 10198654 (-) False AMCG00015493

Expression Profile