RNA id: AMCG00015486


Basic Information

Item Value
RNA id AMCG00015486
length 2061
RNA type mRNA
GC content 0.60
exon number 4
gene id AMCG00015486
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10083788 ~ 10100629 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtttttcttccccctcttgTCATCTTTCGGGGGGCGACTCGCTGTGATCGTTGTGCGCCAGGCAGAGCAGAGGGGTGGAGAGGGCGAGGGAGGCACAGATGAATTGAAGACGacGGCGATCTCCACCCGGGGGAAGCGGAACCCCCCCCGGGCGCCACTGTCGCTGCTGGAGGAGGACGAGATGCGCGATTTCTTGGCAGGCAGGGAGACGCCCCCCGTGCCCTCAACTCGTgcgccctcctcctcctcgcccaGCGTCACCTCGTATGAGCCCTTGGACTTGGCCCCGAAGCCGCCGAACGTGCCGAACTTCATCTTGCCCTTCTTGCCCTTCACCTTAGCGCCCCCCGCCTCCAGGGAGAAATCGCCACCCCCCTCGGCCTCCAGATGCCCGGTGGGCGATGAGGGCGAGGGCACGCCGGCGTCATcactcatggaggaggagcggTGGCGCGACTTCTTAAACAGATCCAGGGAGGCTGACTTGCTCTTGGGTGACACACTGAGGCCGCCGCCGCCACCGCCCACCGCGATGTCACCGCTCAGCAGCTCCCCCGAGCTCAGGCTCAGGCCCTTGGAGCCCTTCACTCCGCCGCCGGCACCAGACAGCTCCAGCTCAGGTCCCTGCAGGCTGAGGTCGGCCGCTGAGCCACCTTTCGTCTTGGCCTTGCCAAAGAACTTGGGCATCTTGATCTTTCCCTTCCCTCCCGGGCTCACCTTCAGCTCCGGCCCCGAGACCTCAAGACCAGGGGAGCCCAGATGGCCACCCACCGAGGGACCCGTCACGTTTACCCCTCCGCCGCCAGCTGCCCCCGCCGAGCCCACATCCACACCCATCTCTGGGCCCTCCAGCTGGGGCAGGGCGATCCCGAACTTGGGCACCTTCAGTTTGGGGAAGGTGACTTGGGTATCTCCAAAATCCAGACCACCCGTCGAGGCCTGCAAGTCAGGGGTGCCTATGTCAACCCCTGCTCCTCCTTTCACATCCAGGCCAGCTCCCGAGATCTTGGGCCCCTTCAGGTTGACATTGGGGGCCTCCACCCTCATGCCCGGGCCCCTGAGCTCCCCAGACAGGCCACCCTTGCCTCCCTGCAGGCTGATGTCTACATCAGGGGAGGAGAATTTTGGACCCTTGATTTCGCCCTGTAGCGTTGGGCCAGAAAGGCTAGCGTCTACATCAGGCAGGTTGACATCTGGGCCTGTGACGTCTACCTTCAGGTCTGGAGCCGACAGGTCCATTTCGGGGGTCTTCAGCCCGCCGGAGAGGGAAGCATCCCCCTTGACCTTGGGTGACCCAATGTCGAACTCAACATCCGGGAACTGCAGCTTCCCAAAGAAAGGTTTCTTGACCTTGGGGCCCTTTAGGTGGATGTCAGGAGAGCCTAGGTCCACATCAACCTCAGGAGACTTCACGTCCATGCTGGCATCTGGCTTCTTCACCTTCCCCTTCATTTTGGGCATCTTAAACTTGCCTTTCTTCCCTTTGAGGTTGACCTCTGGTGTCTCAAGTGTGACATCACCTTCTGGTAGTTTCACGTCTGCTTTGGGGCCCTTGCCACCCAATCCAAACTTTGGCTTCTTGATTTTGGGCATCTTGATGTTAGCATCTGGGCCCTCGAGGCTGATATCCACCCCAGGGACAGAGACCTCCGGAACAGAAATCGAAGGCTTCTTGATACTGATGCCTGAGACACTGATATCTGCTTTAGGTGCCTTGAAGTCTCCCTCTATCTTTGGGGCAGATCCAGACAGGGAGATATCTGGCATGCCAATCTGTGATCCTTTCAGCGATGTCTCGAGACCTCCCTCGATTTGGGGGCCTTTGATGTCTCCCTGGATCTGGGGACCAGAGATGTTTGCTTTGGGAAGGCCCATGGTCACACTTTGGTCTGCCAGTTCAGTGCCTGAAAGGCTGAACCCTGGCATCTCCATTTTGCCCTTCAAGCTGGCGTCTGGAGCTTTGATGTCCACACTGGGGCCTTTGATTCCGCCTGATATTTTGGTGGCAGAGAAGTCCATCCCTCTCCCTTTGACGTCCATCTCTGACCCGGAGATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122438 lncRNA downstream 7895 10026114 ~ 10075893 (-) True G98163
TU122439 lncRNA downstream 58712 10021351 ~ 10025076 (-) False AMCG00015479
TU122440 lncRNA downstream 62233 10018764 ~ 10021555 (-) False AMCG00015479
TU122394 lncRNA downstream 65919 9930341 ~ 10017869 (-) False G98126
TU122412 lncRNA downstream 97160 9974041 ~ 9986628 (-) True AMCG00015468
TU122493 lncRNA upstream 6604 10107233 ~ 10165397 (-) True G98211
TU122498 lncRNA upstream 72472 10173101 ~ 10222525 (-) True G98216
TU122570 lncRNA upstream 187397 10288026 ~ 10340868 (-) True G98269
TU122588 lncRNA upstream 277656 10378285 ~ 10380049 (-) True AMCG00015501
TU122626 lncRNA upstream 388950 10489579 ~ 10493106 (-) True G98314
AMCG00015479 mRNA downstream 57769 10021365 ~ 10026019 (-) True AMCG00015479
AMCG00015478 mRNA downstream 79528 10003136 ~ 10004260 (-) True AMCG00015478
AMCG00015477 mRNA downstream 80700 9997063 ~ 10003088 (-) True AMCG00015477
AMCG00015468 mRNA downstream 104163 9973956 ~ 9979625 (-) False AMCG00015468
AMCG00015470 mRNA downstream 174354 9899672 ~ 9909434 (-) True AMCG00015470
AMCG00015485 mRNA upstream 9766 10110395 ~ 10111184 (-) True AMCG00015485
AMCG00015487 mRNA upstream 21370 10121999 ~ 10128211 (-) True AMCG00015487
AMCG00015497 mRNA upstream 88213 10188842 ~ 10193858 (-) True AMCG00015497
AMCG00015493 mRNA upstream 94935 10195564 ~ 10198602 (-) True AMCG00015493
AMCG00015495 mRNA upstream 100151 10200780 ~ 10211282 (-) True AMCG00015495
TU122362 other downstream 244278 9837502 ~ 9839510 (-) True G98094
TU122072 other downstream 728056 9353217 ~ 9355732 (-) True G97897
TU122046 other downstream 905121 9176218 ~ 9178667 (-) False AMCG00015419
TU122010 other downstream 1043647 9038614 ~ 9040141 (-) True AMCG00015409
TU121992 other downstream 1123644 8956415 ~ 8960144 (-) False AMCG00015400
TU122506 other upstream 89792 10190421 ~ 10192287 (-) False AMCG00015497
TU122509 other upstream 95989 10196618 ~ 10198654 (-) False AMCG00015493
TU122510 other upstream 95989 10196618 ~ 10198654 (-) False AMCG00015493
TU122511 other upstream 95989 10196618 ~ 10198654 (-) False AMCG00015493
TU122512 other upstream 95989 10196618 ~ 10198654 (-) False AMCG00015493

Expression Profile