RNA id: TU122489


Basic Information

Item Value
RNA id TU122489
length 3450
lncRNA type sense_over
GC content 0.47
exon number 4
gene id AMCG00015492
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10213001 ~ 10222496 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACTGAATAGACACTTTACACTTTTGGTAtgtgactgtgttgtgttgttgtgtggaGGCGTAGTTGCCGTGTGTTGGTGagtgactgtgctgtgttgttgtgtagaGGAGGAGTTTGCCGTGCCCGAGCCCCAGCTCAACAGCCACAGGCAGCTGCAGCGCACAAAGACCAAGAGGAAATTCAACTTCCGCATCTCTGAGGAGCAGAGAGCCGAGCAGCGCAGggTGATGATGAGAAACCCCTCTTTGCGCTCTAAGCTCATCTCCAACCCCACCAACTTCAGCCACCTGGTCCATGTGGGGCCGGGCGAGGGGGTACAGAGCGTGCAGGGGGACCCCCGGGCCGTCCCTGCCTCTGCCCCGGCCCCCCACCGCCCCCGCAGTGCCACCGAGTCTCAGCGCCCCCTGTCTGCAGAGATGCAGAGACTCCGAGACCTGCACATGAAGCGCCAGTCTCGTGGGTCTCTCTCCGACGAACTTCTCACTGAATAAGACCCAGTGAAGTGAGAAATGGGGAGGGGTGGGTGGTTGAGGGGTAGTGGGGGCAGAGGCAGAAGTTAAATTGGTACCAAAGAGAAGCCCACTGCTCCCACCCAACCCTGCTGACAGAACCGGACCAGGCACTGGACCACAGAACCCCCCCCAATGCACACCTTCACTCTCTCTGAAATAGCTGTAGCTGCACTTCCCCTCTCTGACCACAGGGAGGAGGGCAGGGCACCCAGATCTCCCAGTAGGTCCCTGAGATGGATCAATCAGTGCCCATCTTCAGTCGGGGGATCTCCCATTATACCCGCTCTGCCTGGTCCCCAACGCTGCGCAGAACCACAGCATAAGCTGAATTCGAAACGGGTTCTTCCGTGTCACTACTGACCTGTGtttcattttagtgtattttttaaaccactttttaaatttattatcatttattttatgttgatgaTCATTTAGAGTTCTTGTGATGCTTGATTTTAAATTTAGGATATTTAACAAACCTAACCAAAACATGGCAAAGTGCAATGCTGTGAAGAGCAGGGATGTTACTGCTGGACACCAGACACTGGACATTGGCTGCTGAAAGAACAGAGGAAGAATCCCAGACCAAAAATGGGGTGTATTTTTCATACGTCATAGAAATGTGCCGCCCTGGTCTCTTCCATGTGCCCAAGCAGACCACTCTCGTACGTTTAGATCCCCTGGGACGCATTTTGAAACCTCTTTTAGTCTGTCAGCCCTGCGTTAGTTTCGCAGGTTGAGAATGTATCGTAGAAACCTGACCTGAGATGGTTTACAGActgaagtatatttaaaatgcgtCCCTTGGATTTAAAACGTTTGGAACAAAGGGAGGAGGGAGCTCTGAGAGAGCCAACCCAAGGCAGCGAGGGAACAAAAATGTCCACCATTATGTAATCAGGACTTCAGTCATGGCGCAGTGCCTCAAACCCACTGCTTTTAGGAATCAGCTGTTACGTCATCTCTCTACCCGGGCCGAGGACATCGCGTACGTCTGCGGCACTGGCTGCGGTAGTTCTTGGGGATAATATCACGTGCCGTCTCAGGAATGTATATTGTGACTTGTCAGGGACCGCTCGGGTGTGTGCTGGAAAATCGAATGTTCTCTTCTGTTTGTCATCTTTGTAAGAGACTGCCGGCCCTGGCTGGGTggactttctttttattttcatgtattttttattttgcattcgtGGTACGCCTTGCTGCAATCCCAACCCCAAGGGCCCCCCAGGGAACTACTGCTCCACTGTGACTTCATCCAGGGTCGGGGGGGTTGCCTGGGGGTTGTTACATCATGGGGCCGTGAGTTTCCTTGGGGAGGAGGGGTTGCCTGCACTGTGGGAGGTATCGCTCTTTCTGTCGCTACGGGTTACCACTGTTTATAACAGTTGACTGTTAAAGGTCACCTTCTTggcctctctctcactcaatATTCATATGATTTATGCTCAAGTCTTGATTCCTTgagaggggggggggtagtgttgcacccccaccccacctgcCACAGCCTTTGAGCCCTGCCAAGGCCGTGATGTCACACAGTGGTCCCATTGGTCTTCTGCCAGGGGGTCAAGTGGCACAGCAGGGTCATGGCCACATCCCCTAGGCCCCCACAGAAGCCACCAGGGaagccaaatgtaaaacagccaGAATTAAATATTCTGTACTGTTTTCTTGTGTTAGTCTTACAGTAAGAAAATGTTTAGATATCTAAATGTTTGGCTAACTAATGATATAGATCAAATTGAAACACTTTCTCTGGTTCAATAAGGCTGATACACACCTATAAGACTCAGGACTCCGCTGACTTGGGGATCAGTGTTTATAGCCTGAtggtaaaatactaaaatattgtttttttttaaataaatttgtatatgtttttagatACTGTATTTTCTCAAGCAACTGTGTGGGTATAGGTGAGAAATatattgtgctgtgtgtgcgtgtcacgaacacacacacaattatatgtGATGTTCTCTGTATATAAACTGATTGGATCAATGTTACAGGCCGGTAGGCGGCTATAAGAGCCTATGGGCTacatatcatataaatataaattatcatCGGGAAATGCTTTAACTGCAATTTAACTGGCAAGAGAATCCCCTTtaacaaacgcacacacacatccacacataCTCTAAAACGCAcagtcacatacacacacacactctcacagtcacacagacacaattacACACTCTCACAGGTTGGTTGAATGTTGTGCAAAAATTGTGTGGGTAGGGGCTATAGAAATCCACTGGAGTTCCTTATTTGTTCCTAACTTGGCCAGGAAGTTGGCATGGGACGTGTAGACGTGCACAATGTCTGTTCCTCTCTGCCCTGCTGTCCTGTGAGCTGCTCAGAGCATTGCTGTTCCAATGATGTGTCAATCATAGGCTGCACTGCGGGCATCACACCAGCTACATTGTGGcagcagttgttgttgttgttgttgttgtagttgtagtagtagtagaagttgTAGTTACAGTAGTATTGGTACACAACAGAGACTGCATggtacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatatgtgtgggGAACTGTGCCAAAGCTTCACACAACACATTACTCTACCAAAGAGCTGTGTATGTTTTggactgttttgtgttttaatacacacatataaatatataagataTACTTAGTgtggggtttaaaaaaaaatatatatacatattataatgtttcatacattttatatctatttatgaGATGTCGTTGCAGCTCTATTTTTGTAACATGTTGATCTGAAATGCGTGTCCTTGTAGTTTTAGTCATGATGATGATGCTGGTGATTATTGCTCCTGTGCTGTTAATAGGACGTGTCTGTGGCTGTGTTATGGGCTGGGGGTCTGCTGTTAAAACTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122474 lncRNA upstream 21150 10196627 ~ 10197404 (+) True G98195
TU122320 lncRNA upstream 205666 10001214 ~ 10012888 (+) False AMCG00015475
TU122278 lncRNA upstream 339418 9878459 ~ 9879136 (+) True G98060
TU122272 lncRNA upstream 356418 9859098 ~ 9862136 (+) False AMCG00015456
TU122221 lncRNA upstream 457866 9759572 ~ 9760688 (+) True G98025
TU122548 lncRNA downstream 100762 10323258 ~ 10323970 (+) True G98255
TU122533 lncRNA downstream 116612 10339108 ~ 10340845 (+) True G98244
TU122580 lncRNA downstream 142886 10365382 ~ 10365647 (+) True G98277
TU122586 lncRNA downstream 156111 10378607 ~ 10379031 (+) True G98282
TU122603 lncRNA downstream 189391 10411887 ~ 10418700 (+) True AMCG00015504
AMCG00015489 mRNA upstream 22682 10193707 ~ 10195872 (+) True AMCG00015489
AMCG00015482 mRNA upstream 30016 10179824 ~ 10188538 (+) True AMCG00015482
AMCG00015481 mRNA upstream 42433 10167627 ~ 10176121 (+) True AMCG00015481
AMCG00015480 mRNA upstream 56786 10158828 ~ 10161768 (+) True AMCG00015480
AMCG00015483 mRNA upstream 119380 10095089 ~ 10099174 (+) True AMCG00015483
AMCG00015490 mRNA downstream 5555 10228051 ~ 10228836 (+) True AMCG00015490
AMCG00015488 mRNA downstream 41526 10264022 ~ 10264459 (+) True AMCG00015488
AMCG00015491 mRNA downstream 54944 10277440 ~ 10289390 (+) True AMCG00015491
AMCG00015498 mRNA downstream 81243 10303739 ~ 10305772 (+) True AMCG00015498
AMCG00015503 mRNA downstream 167797 10390293 ~ 10394630 (+) True AMCG00015503
TU122488 other upstream 1353 10213001 ~ 10217201 (+) False AMCG00015492
TU122332 other upstream 132042 10085428 ~ 10086512 (+) False G98093
TU122336 other upstream 132042 10085428 ~ 10086512 (+) True G98093
TU122294 other upstream 287750 9929592 ~ 9930804 (+) False AMCG00015464
TU122266 other upstream 346549 9815718 ~ 9872005 (+) True G98053
TU122544 other downstream 94412 10316908 ~ 10317325 (+) True G98251
TU122613 other downstream 225670 10448166 ~ 10450663 (+) True G98302
TU122743 other downstream 513483 10735979 ~ 10741133 (+) True G98402
TU122817 other downstream 842222 11064718 ~ 11066855 (+) False AMCG00015539
TU122931 other downstream 1135656 11358152 ~ 11361743 (+) False AMCG00015544

Expression Profile