RNA id: TU122512


Basic Information

Item Value
RNA id TU122512
length 897
RNA type TUCP
GC content 0.60
exon number 6
gene id AMCG00015493
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10195564 ~ 10198654 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCTCCTACGCAAAGAGGTGGTCGCCGTTGCTTCTCTACTCGCCTGCCCAGGTTTGGCTGTGCGTGCTTTCCGGATTGGCCTGGGTCGCCGGAGCCCGGGCCCTGGCACTGGTCCTGGCACTGGTACGTCGCCGTGTCGAAGTCGGGGAGAGTGCAGTGACGGTGAGGCGGTTGGGCACAGGATGCCCAAGCGCAGCTGCCCCTGGACTCAGAGCGCCGCCCCCCAGAGGAAGACGCTTGTGACAGAGAGGGCGCAGGCCGGGGAGGAAGGCAGGAAGGAGGTGTACGAACGGACCCAGGCTCTGTTATTCTCGGGGGCCCGCTCACTCTCTTATTCCTGCCCCCCCGCTGCCTCTGCCTCACCCACCACCGCCCCACCCCTGCAGGGGTCAGTGAGGGGTCAGCTGCGTCTGGGCCCCCGGGGAGAGCTGCTGAGGAGCCCCCCCACGCCCATCTCGGCCCCTCCAGGCTCCCCCCCTTGTGCGGCCTGCTCTCTGTGCCTGCGGCCGCTGACCCTTGCCCGCTCCCCTGTCCGCTGTGCCCGCTGCGAGAGAGCGATGTGTGGGCTGTGCCAGCGCAACTGTGCCCAGTGCCTCCAGGACTACTGCTTCAGCTGCTGCACCCCCAGCTATGAAGGCCCCTATGAGGTGATGGTGTGTGCTGACTGCCCCCCTCCGCAGTGACCAGATTGTCCAGTGATACACTGTACCGTCCTGTGATAGTGCCCTACACTGTCCTGTATTCAGTGTTCCAGCTGCAGCTCCACCCTCgtctttgcattttatataaaaaatgtgattatttttctACCTTTGGTTGTAAAGCTCTGAACATGAAATTTAATACCGGAAATGAAcacattgaataaataaatacatctttctttgttttttgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122493 lncRNA downstream 31221 10107233 ~ 10165397 (-) True G98211
TU122438 lncRNA downstream 120725 10026114 ~ 10075893 (-) True G98163
TU122439 lncRNA downstream 171542 10021351 ~ 10025076 (-) False AMCG00015479
TU122440 lncRNA downstream 175063 10018764 ~ 10021555 (-) False AMCG00015479
TU122412 lncRNA downstream 209990 9974041 ~ 9986628 (-) True AMCG00015468
TU122570 lncRNA upstream 89372 10288026 ~ 10340868 (-) True G98269
TU122588 lncRNA upstream 179631 10378285 ~ 10380049 (-) True AMCG00015501
TU122626 lncRNA upstream 290925 10489579 ~ 10493106 (-) True G98314
TU122734 lncRNA upstream 469235 10667889 ~ 10704395 (-) False AMCG00015519
TU122740 lncRNA upstream 509767 10708421 ~ 10708752 (-) True G98399
AMCG00015497 mRNA downstream 2760 10188842 ~ 10193858 (-) True AMCG00015497
AMCG00015487 mRNA downstream 68407 10121999 ~ 10128211 (-) True AMCG00015487
AMCG00015485 mRNA downstream 85434 10110395 ~ 10111184 (-) True AMCG00015485
AMCG00015486 mRNA downstream 95989 10083788 ~ 10100629 (-) True AMCG00015486
AMCG00015479 mRNA downstream 170599 10021365 ~ 10026019 (-) True AMCG00015479
AMCG00015495 mRNA upstream 2126 10200780 ~ 10211282 (-) True AMCG00015495
AMCG00015496 mRNA upstream 55038 10253692 ~ 10259089 (-) True AMCG00015496
AMCG00015494 mRNA upstream 69285 10267939 ~ 10270312 (-) True AMCG00015494
AMCG00015499 mRNA upstream 99389 10298043 ~ 10334137 (-) True AMCG00015499
AMCG00015500 mRNA upstream 154555 10353209 ~ 10355965 (-) True AMCG00015500
TU122506 other downstream 4331 10190421 ~ 10192287 (-) False AMCG00015497
TU122362 other downstream 357108 9837502 ~ 9839510 (-) True G98094
TU122072 other downstream 840886 9353217 ~ 9355732 (-) True G97897
TU122046 other downstream 1017951 9176218 ~ 9178667 (-) False AMCG00015419
TU122010 other downstream 1156477 9038614 ~ 9040141 (-) True AMCG00015409
TU122572 other upstream 127345 10325999 ~ 10340868 (-) False G98269
TU122879 other upstream 815971 11014625 ~ 11245562 (-) True G98502
TU122882 other upstream 815971 11014625 ~ 11245562 (-) False G98502
TU122884 other upstream 824515 11023169 ~ 11237850 (-) False AMCG00015532
TU122907 other upstream 1034661 11233315 ~ 11261168 (-) False AMCG00015535

Expression Profile