RNA id: AMCG00015508


Basic Information

Item Value
RNA id AMCG00015508
length 1886
RNA type mRNA
GC content 0.63
exon number 10
gene id AMCG00015508
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10450229 ~ 10460735 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACGTCATCCGGGTATTTCCGAGAGGGGAGTACGACTCGGGCGCCTGCGGGAGCGACGGACGGGGCGGAGGGGCGCAGACACGGGCGAGGACCGGGGCGACACGACAACAAACCCGTCCACAGCGGAAGGCGCACACAGTCGGGTGGCTCCGGCGGCTTAGCTCTGCGACAAAACACGGATAGACCCCCGGGAGCCGAGATCGCGGTGCGGGCGACGCGCATTTCGGATGGCGAACATGGATGGAATGCCGTTTTCCTGGAACCAGTCCAACATGAACACAGGGGCTCCCTACACAGAGATCATCGAGCAGCCCAAGCAGAGAGGGATGCGCTTCCGCTATAAGTGCGAGGGCCGGTCGGCGGGCAGCATCCCCGGCGAGAAGAGCAATGACAGCACCAAGACACACCCAGCCATCAAGATCCACAACTACAGCGGCCCGGTCAGGGTGCGCATCTCCCTGGTCACCAGGAATGTACCGTACAAACCGCATCCCCACGAGCTGGTGGGCAAGGACTGCAAGCACGGCTACTACGAAGCAGACCTGCAGGACCGGCGTAACCTGGGGATCCAGTGTGTGAAGAAGAAGGACGTGGCAGAAGCAGTGGCATATCGGCTACAGACGCAGAACAACCCCTTCAACATCCCAGAGGCAGACGTGTGGGGGGAGGAGTATGACCTGAACGCCGTGTGCCTGTGCTTCCAGACCTCCATCCACTTGCCCACAGGGGAGCTTCTCCCACTGGAGCCTGTGGTGTCCCAGCCCATCTACGACAACCAAGACATCGAGGTGCGGTTCTTTCGGGACTCCTGGGAGGGGAAGGGCTCCTTCTCCCAGGCTGACGTGCATCGCCAGGTGGCCATCGTGTTCCGGACGCCCCCCTACAGCGACGCCAACCTCACCGAGCCCGTCAAGGTTAAGATGCAGCTGCGGCGACCCTCCGACCGGGAGGTCAGCGAGCCTGTGGACTTCCAGTACCTCCCGGTGGACCAAGATGAGTACCGGCTGATGGAGAAGCGGAAACGCACGGAGGGAATGTTCCAGAACCTCAAGCTGTCGAATATTGTTCAAGGGGCGACCCCAGTGGATAGGCGGCTCTTCCACATCCCCAAGAGGACACCCATGGTATCGGCGCCCACGTTTTTCAGCTCCCCACCGCCCGCCTTTCAAGTGGTGCCAAGCCAGCCCAAAGCAGACGAAACCACGCCCGTCTGGTCCTTCATCAGGGACCTGACGATGGACGAGCCCGGGAAAAGCGCCACCCCGGCTGCTGCCACCACCTTCGGTGCCCCTACCCAGGACTACCCCACAGTCAACCTGTCTGACTTGTACGGCTACACCTTCCCGGGGATCTCCGGTGCCAAggatggtgggggtgggggtgggggtggaggggtggtTAGTGATGCCGGGGCAGGAGGGGGAGGCGGCGGCAGCGGCGGTGGCGGCGGCTGCATGGGGGGGGTCATGATGGACACGTCGGCCCCACTGAAGCCCCTCTTCAGCGGTCATGAAGACGACGACATCCCAGAATTCCCCAGCTTCTCGGAGGCCCAGCCCTCGGTCACCCTGGACTGCATCGACACAGAGGAGTTCCAGGAGCTGCTGGGGCAGAACTGCGTTGCGGTGCCGGAGGGCACGGGCGGCTCCCAAGGCCAGGACCCCGCGGCCGGGCAGATCTCCAACCCCAACACCTGGATGAACTACCCCAACAGCATCATGAGTCTCCTGCAGAGCGAGGGCCTGCTGGACAGCGGCACCCATCATCAGCAGGCCATGGCCCCCACGCTGGACGACACCGACGAGCTCAACTCCCTGGACGACGACCGCCTCATGTCCATCTTCAGCGGCAGCTCCCACAACTTCCTGTCCCACAACCCCGGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122588 lncRNA downstream 70180 10378285 ~ 10380049 (-) True AMCG00015501
TU122570 lncRNA downstream 109361 10288026 ~ 10340868 (-) True G98269
TU122498 lncRNA downstream 227704 10173101 ~ 10222525 (-) True G98216
TU122493 lncRNA downstream 284832 10107233 ~ 10165397 (-) True G98211
TU122438 lncRNA downstream 374336 10026114 ~ 10075893 (-) True G98163
TU122626 lncRNA upstream 28844 10489579 ~ 10493106 (-) True G98314
TU122734 lncRNA upstream 207154 10667889 ~ 10704395 (-) False AMCG00015519
TU122740 lncRNA upstream 247686 10708421 ~ 10708752 (-) True G98399
TU122857 lncRNA upstream 387554 10848289 ~ 10849258 (-) False AMCG00015524
TU122894 lncRNA upstream 682783 11143518 ~ 11149864 (-) True G98510
AMCG00015506 mRNA downstream 13219 10431798 ~ 10437010 (-) True AMCG00015506
AMCG00015507 mRNA downstream 45373 10394444 ~ 10404856 (-) True AMCG00015507
AMCG00015501 mRNA downstream 64850 10379770 ~ 10385379 (-) False AMCG00015501
AMCG00015500 mRNA downstream 94264 10353209 ~ 10355965 (-) True AMCG00015500
AMCG00015499 mRNA downstream 116092 10298043 ~ 10334137 (-) True AMCG00015499
AMCG00015514 mRNA upstream 32405 10493140 ~ 10505219 (-) True AMCG00015514
AMCG00015515 mRNA upstream 69318 10530053 ~ 10538036 (-) True AMCG00015515
AMCG00015518 mRNA upstream 174180 10634915 ~ 10636279 (-) True AMCG00015518
AMCG00015519 mRNA upstream 194450 10655185 ~ 10668046 (-) True AMCG00015519
AMCG00015526 mRNA upstream 316095 10776830 ~ 10795268 (-) True AMCG00015526
TU122572 other downstream 109361 10325999 ~ 10340868 (-) False G98269
TU122510 other downstream 251575 10196618 ~ 10198654 (-) False AMCG00015493
TU122879 other upstream 553890 11014625 ~ 11245562 (-) True G98502
TU122882 other upstream 553890 11014625 ~ 11245562 (-) False G98502
TU122884 other upstream 562434 11023169 ~ 11237850 (-) False AMCG00015532
TU122907 other upstream 772580 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other upstream 796543 11257278 ~ 11261168 (-) False AMCG00015535

Expression Profile