RNA id: AMCG00015511



Basic Information


Item Value
RNA id AMCG00015511
length 1065
RNA type mRNA
GC content 0.63
exon number 6
gene id AMCG00015511
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10543262 ~ 10546764 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCAGAAGTTGACTGCAAAGGTTTCTCCAGGAGGTCCCCATCCCACGCCGGTCCTCTCCCTTACAACCCCAGAGGAGACACAAGGTGATTCCCAGACAAAGAGCTGGGCCCAGGCTAGGTCTGTACCAGTGCTGGTGCCAGCTGCGATAgcagagaaggaggaggaggaggaagaagggaCCAGGACCAAGGGGTGTGTGCGGTGCCCAAGGTGCCCTTGGCGTGGGCTGCGGAGGCTGGTCTGGGGCATACTGCTGGGGGGCGGCGTGGCACTGGCCTGGGCGGGGGGCACACACTGCGCCAGGCGGACACTGCAGACCCTCCCTGCCCCCTTCTTCATCACCTGGTTCGCCAGCACCTGGAACCTCCTGTTCTTCGCTTTGTACTACCTGGGACACTTACTGGGGGCGGACAAGAGGCAGTGGCCAGTCACTCGGTTCCGACAGTGCAGTGAGCTCCTGGGTGAGGGGGGTGTTGCATCAGGGGGTTGGGCCGGGTGGCGGGGCCTGCTGTGGCGGGTGGCGCTGTTCTCGGCGCTGTGGAGCATCGCCACCTTCCTGTACCTGCTGTCACTGCGACGCATCTCCCCCGGCGATGCCAGCACGTCCTGTGCCGGGCTCTGCAGTGCGGCGCTGCAGGGCTGGTTGTGTGCGCTGCTCTACCTGAGTGGAGTCGAGTACTGGAGTCCCACGCTGCCCCTGCCCTGGACACAGCTGTGTGAGCTGGCCTGCCTGCTGCTCAGTTTCAACATCCTGGTTCATTTTGGGGATACCTTCACGCACCCCGCCTTCATCTCCTTTGGGATCTTGCTAAGCGTTCCAACCAACACAGTGATGAGTATGTACCTGGACCCAGCCCTGCAGTTCAGTCAGGTGCGCCTGGCCGCCACGGGTATCATCGCCAGTGGCtttttgttgctgctgctgcccgaGCGCTGGGATGAGAGCGTCCTCAGCTGGCTGGGGGGTCTCAGGGTGGGGCGACATTGTGAGGAGCATCTTGAGGAGGCAGGGGAGGGAGCGGTGACCAGCCGAGCCAAGCCCAAACTGTCAGGGCTGCAATGa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU122657 lncRNA upstream 2449 10529960 ~ 10540813 (+) False G98338
TU122624 lncRNA upstream 46200 10496836 ~ 10497062 (+) True G98312
TU122623 lncRNA upstream 48311 10494524 ~ 10494951 (+) True G98311
TU122622 lncRNA upstream 49561 10489908 ~ 10493701 (+) True G98310
TU122608 lncRNA upstream 111218 10428585 ~ 10432044 (+) True G98299
TU122739 lncRNA downstream 161657 10708421 ~ 10708753 (+) True G98398
TU122777 lncRNA downstream 272984 10819748 ~ 10820170 (+) True G98422
TU122785 lncRNA downstream 346409 10893173 ~ 11227821 (+) False AMCG00015528
TU122795 lncRNA downstream 377368 10924132 ~ 10938566 (+) True G98430
TU122811 lncRNA downstream 442092 10988856 ~ 11019109 (+) True G98442
AMCG00015509 mRNA upstream 1315 10539920 ~ 10541947 (+) True AMCG00015509
AMCG00015512 mRNA upstream 26223 10512635 ~ 10517039 (+) True AMCG00015512
AMCG00015505 mRNA upstream 53945 10484942 ~ 10489317 (+) True AMCG00015505
AMCG00015502 mRNA upstream 99635 10435851 ~ 10443627 (+) True AMCG00015502
AMCG00015504 mRNA upstream 125810 10413326 ~ 10417452 (+) False AMCG00015504
AMCG00015510 mRNA downstream 1012 10547776 ~ 10553456 (+) True AMCG00015510
AMCG00015513 mRNA downstream 7902 10554666 ~ 10555449 (+) True AMCG00015513
AMCG00015517 mRNA downstream 20745 10567509 ~ 10604062 (+) True AMCG00015517
AMCG00015516 mRNA downstream 66644 10613408 ~ 10626064 (+) True AMCG00015516
AMCG00015522 mRNA downstream 188595 10735359 ~ 10736975 (+) True AMCG00015522
TU122613 other upstream 92599 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 225937 10316908 ~ 10317325 (+) True G98251
TU122488 other upstream 326061 10213001 ~ 10217201 (+) False AMCG00015492
TU122332 other upstream 456750 10085428 ~ 10086512 (+) False G98093
TU122743 other downstream 189215 10735979 ~ 10741133 (+) True G98402
TU122817 other downstream 517954 11064718 ~ 11066855 (+) False AMCG00015539
TU122931 other downstream 811388 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 1913820 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 2428875 12975639 ~ 13046813 (+) True G98759

Expression Profile