RNA id: AMCG00015512


Basic Information

Item Value
RNA id AMCG00015512
length 1270
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00015512
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10512635 ~ 10517039 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAAACTGCGTTGGTAACTGAGCTGGAAAGGCACTGTGAGGTCTGTACAAGAGTTGTATCTGAACGGAGAAAGAGGTGGGATAATTAACGGGGATAATTAGGACGACACGTTTCTAAAAAAGCTCCCAGCGTTTCCATTTCAGCGAGCTGCCAAGGTAGAGCCATGGCATCCATCCCCAAAGTCAAAGAGTTGGAACAATGCTTGAATTTATATCAAATAATGTACCAGGATGCAGGAGTGCTTCATGTGTTGCAAGAACAGTGCATGCTGTACAGTTACAGTCAATGGTCTGTTGTGCAGAGATGGGTGGACTTCAGTAGAAAGGAGGGAGGCCTGGCCCTGACCCAGAGCAACCTGGATCTCTTTGAACGACAGGACCGGGGCACTGACTGGATTCAGTCTTATAATATGTCGGCTATCACAACAGGCAACCTGAGTCACATGAGGCAGGGGTTCTCCTCCAGGTCGTGGATTCCCTGCTTCCTTCACAGTGTGGATCTCTGTGTGGACAAGCTGCTGCTCTTGGACCTGGTGTCAGCGCCTCTCTCACGACTTCGCAAAGTGGTGTCTGCTTTCACCAGGTCCACTCAGTACCGAGAGGCCCTCCTGAAGAAGCAGACAGAGCTGAGTTTGTCCAAAGATCAGCTGATCCTTGACCAACCTAAGAGATGGAGGTCCACTTACAGTATGGTCAACAGATTCCTGGAACAAGAGGAAGTGGTTTCTGCAGTTCTCACTGAGAATGGCAAGAGCCACCTTCTCCTCCAGGAAGCTGAGATCACTGTTTTGAAGGATGTCCACTCTGTCCTGCATCCCCTGTTTGAGCTGATGGAAGCCCTGCTAGTGGAAAAACCCATAATCATGTCTTCGATCCCTCCTGTCCTGTGGAGGATGAATTCCTCAATGTCAGTTGCCGATGGAGACAGTGACCTGGTGAAGCAGATGAAACAGATGATGATGTCTGATCTGAAGAAACAGTATGGCAGTGAATGCCTGCAAACTGTCCTGGACTGCGCCTCGTTCCTAGACCCTCGCTTCAAGAACACCTTCGTCACCGACCCACAGGCCGTGAGGACGGAGCTGATGGGGCAAGTGATGACCCTCCCTCAGCCCCCGACTGCGGGGACCCAGCAGAGCATGGAGCCGGCCCCCTCCTTCTCCAGCTTCAACCCCTCAACCCCTGAACCGCAGGGCAAGAGGCGCAGATCTGACCTGCAGGGCTTGCTCTGTGATATTAAGAACCAGAAGGAGCTGGAGACTCCTACAGGG

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A
ko05162 Measles

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122624 lncRNA upstream 15573 10496836 ~ 10497062 (+) True G98312
TU122623 lncRNA upstream 17684 10494524 ~ 10494951 (+) True G98311
TU122622 lncRNA upstream 18934 10489908 ~ 10493701 (+) True G98310
TU122608 lncRNA upstream 80591 10428585 ~ 10432044 (+) True G98299
TU122603 lncRNA upstream 93935 10411887 ~ 10418700 (+) True AMCG00015504
TU122657 lncRNA downstream 12921 10529960 ~ 10540813 (+) False G98338
TU122658 lncRNA downstream 12921 10529960 ~ 10571890 (+) True G98338
TU122739 lncRNA downstream 191382 10708421 ~ 10708753 (+) True G98398
TU122777 lncRNA downstream 302709 10819748 ~ 10820170 (+) True G98422
TU122785 lncRNA downstream 376134 10893173 ~ 11227821 (+) False AMCG00015528
AMCG00015505 mRNA upstream 23318 10484942 ~ 10489317 (+) True AMCG00015505
AMCG00015502 mRNA upstream 69008 10435851 ~ 10443627 (+) True AMCG00015502
AMCG00015504 mRNA upstream 95183 10413326 ~ 10417452 (+) False AMCG00015504
AMCG00015503 mRNA upstream 118005 10390293 ~ 10394630 (+) True AMCG00015503
AMCG00015498 mRNA upstream 206863 10303739 ~ 10305772 (+) True AMCG00015498
AMCG00015509 mRNA downstream 22881 10539920 ~ 10541947 (+) True AMCG00015509
AMCG00015511 mRNA downstream 26223 10543262 ~ 10546764 (+) True AMCG00015511
AMCG00015510 mRNA downstream 30737 10547776 ~ 10553456 (+) True AMCG00015510
AMCG00015513 mRNA downstream 37627 10554666 ~ 10555449 (+) True AMCG00015513
AMCG00015517 mRNA downstream 50470 10567509 ~ 10604062 (+) True AMCG00015517
TU122613 other upstream 61972 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 195310 10316908 ~ 10317325 (+) True G98251
TU122488 other upstream 295434 10213001 ~ 10217201 (+) False AMCG00015492
TU122332 other upstream 426123 10085428 ~ 10086512 (+) False G98093
TU122743 other downstream 218940 10735979 ~ 10741133 (+) True G98402
TU122817 other downstream 547679 11064718 ~ 11066855 (+) False AMCG00015539
TU122931 other downstream 841113 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 1943545 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 2458600 12975639 ~ 13046813 (+) True G98759

Expression Profile