RNA id: AMCG00015513



Basic Information


Item Value
RNA id AMCG00015513
length 285
RNA type mRNA
GC content 0.71
exon number 2
gene id AMCG00015513
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10554666 ~ 10555449 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACAGGTGGTGGGGGTGGGCTGCTCCGGCTCGCTTTCGCCGGGGAGCGGGTGGGGGAACACCGAGAGGAGCCCTTACCGAGAGGGAGCGGCGAGGCCGGGGCGCCGGGGCGGGGAGCGGAGAGGGGCGAGGCCGCTGCCGCAGACAAAGGGATCGGGGAACAGAGCTCGCTGACACCCGGCGCGGCTGAACAAGACACGGGGAGGCTTCTAGCCGACGCCAGCCAGCTAACGGGCCGAGAACCCAGCCGTCCTCCAGCGCTGGGGCATCTGACTGAGCAGGACTAG

Function


GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04974 Protein digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU122657 lncRNA upstream 13853 10529960 ~ 10540813 (+) False G98338
TU122624 lncRNA upstream 57604 10496836 ~ 10497062 (+) True G98312
TU122623 lncRNA upstream 59715 10494524 ~ 10494951 (+) True G98311
TU122622 lncRNA upstream 60965 10489908 ~ 10493701 (+) True G98310
TU122608 lncRNA upstream 122622 10428585 ~ 10432044 (+) True G98299
TU122739 lncRNA downstream 152972 10708421 ~ 10708753 (+) True G98398
TU122777 lncRNA downstream 264299 10819748 ~ 10820170 (+) True G98422
TU122785 lncRNA downstream 337724 10893173 ~ 11227821 (+) False AMCG00015528
TU122795 lncRNA downstream 368683 10924132 ~ 10938566 (+) True G98430
TU122811 lncRNA downstream 433407 10988856 ~ 11019109 (+) True G98442
AMCG00015510 mRNA upstream 1210 10547776 ~ 10553456 (+) True AMCG00015510
AMCG00015511 mRNA upstream 7902 10543262 ~ 10546764 (+) True AMCG00015511
AMCG00015509 mRNA upstream 12719 10539920 ~ 10541947 (+) True AMCG00015509
AMCG00015512 mRNA upstream 37627 10512635 ~ 10517039 (+) True AMCG00015512
AMCG00015505 mRNA upstream 65349 10484942 ~ 10489317 (+) True AMCG00015505
AMCG00015517 mRNA downstream 12060 10567509 ~ 10604062 (+) True AMCG00015517
AMCG00015516 mRNA downstream 57959 10613408 ~ 10626064 (+) True AMCG00015516
AMCG00015522 mRNA downstream 179910 10735359 ~ 10736975 (+) True AMCG00015522
AMCG00015521 mRNA downstream 184021 10739470 ~ 10742405 (+) True AMCG00015521
AMCG00015520 mRNA downstream 213935 10769384 ~ 10772564 (+) True AMCG00015520
TU122613 other upstream 104003 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 237341 10316908 ~ 10317325 (+) True G98251
TU122488 other upstream 337465 10213001 ~ 10217201 (+) False AMCG00015492
TU122332 other upstream 468154 10085428 ~ 10086512 (+) False G98093
TU122743 other downstream 180530 10735979 ~ 10741133 (+) True G98402
TU122817 other downstream 509269 11064718 ~ 11066855 (+) False AMCG00015539
TU122931 other downstream 802703 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 1905135 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 2420190 12975639 ~ 13046813 (+) True G98759

Expression Profile