RNA id: AMCG00015516


Basic Information

Item Value
RNA id AMCG00015516
length 3260
RNA type mRNA
GC content 0.59
exon number 13
gene id AMCG00015516
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10613408 ~ 10626064 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGCCCACATCTGGACAGCCACTGTGAGCGCCCACATCTGGACAGCCACTGTGAGCGCCCACATCTGGACAGCCCGGACTAGGTATCGCTGATCATATCCCCCGGGATGGAGACGCGGAGGCGAGCGGGAGCTGCGGCAGTGCCAGCCCTGTGCGcgttgctgctgctgcagggtcTCCGGGCGCCGGGCACAGGTGGCACCCCCGCGGCGCTGGAAGAAGACCTGCTGAACACCCTGGTGAAGCAAAGACTGGACTGGACGACTTCGCCAAACAAAGCTTGGAAAGAAGTTTCCCTTCCCGTTGTGAGAGCCGCCCCGCACCCGATCTACCAAGCCTGCAACTCCAAGATGAAGGACGTCATCAAAGACCTGACGACTGATTGGATCCCTCGGGGGGATGCCCGTCACCTGTTCCTGGACCTGCAATTCAGTGAAGAGCTGGAGGGTGATGCCCACTACAGCCCATTGGAAGTCTACCTCGTAGAATCAGAATCAGAAATCAGAGGGTTGCGGTGGAGGGATGCCTCCCAAGATCCCCTGGTGTTTCGAGCCAGCCAGCACTTCCAGAGAACATCAGACATCCACGGGATTAGAGAGGCTCTCGAGAATGTCACCGGCCAGGCTCTGGGGCCTCTCTCCAAGGAGGGTTTCCACCTGAGCTTTTCCTACTCCGGGCCATGCCTCATCATCGCCTCAGTCAGGGTGTTCTTCAGGAGATGCCCAGGCTTCACGCAAGACCAGGCCCGATTCAGGTCAGTGGCAGCAGGGTCCGGGCTGGTGCAGGGGTCCTGTGTGGCCAACTCTACCGAGGTGGCCCCCCCCCACAGAGAGTGCCTGGAGGATGGGCACTGGGGGCCCCTACAGGGCCATTGTGTCTGCAGCCCGGGATACCAGCCAGCAGGAAGCTCTTGTGAAGccTGCAGGATCGGACAATATAAGCCAGCGAACGACAGTGGGGCGTGCCGGCCCTGTCCTCCCCACACCAGGACGCACAGCGAGGCAGCTGAGCAGTGccagtgcatgctgggatatTCCCGCATGGCAAGCGACCCCTTTGAGATGGGCTGTACGAAACCTCCAACGGCCCCGAGAAACCTAACCTCCCACTTCCTGAGCCCCTCCTCACTCCTCCTGTCCTGGGAACCACCCTCTGACCTGGGGGGCCGCCGGGAGGTGCTGTACAAGGTACAGTGCTTGGAGAGGGCCGGGGGGAGCAGTTGGGATGACTGTGGGGAAAGTGTCCAGTGGGGATCGGACAGTGAGGGACTGGCAGAGACCGGAGTCAACATCACCGGGCTGCACCCCCGGCGGGACTACCGATTCTCCGTCTGCGCCACCAACACCGTGTCGGACTCCCAGATGGCCCACGCCTCCACCACCACTGTCACCATTAGTCGCTGGACTGACATGCTGACCCTCCCCCCGGTGCAAGAGCCCCTAGGGAAACCCTCGCAGCAGCACTGGGTGTTGTGGGCCTGCCTGGCTGGGGTCCTGGTGCTGGGTTCTGTGGTGGCCATTGCCTGCCTGGCACGAAGAAAGTACCACAAACTGTATCAGGAGCAGGAGGTGGAGCTGCTGCCAATCCAAATGCGAGTGACATACCGCCGGACCGAAGAGGCCAGGCCTGCCCCCCCGCAGGTCAACTTGGGCATCTACAGCCAAGATGACCTGGAGTCCTTCCTGGGGGAGGCGGAGATCATGCGGACCTTTGACCACAGCAACGTGGTCAAACTCCTGGGGGTCGCTCTGGAGGCCAGCGAGGAGGGCTCTGTGCCCGTGCCTCTTGTCATCCTGCCCTTCATGCAGCACGGGGACCTGCGCCGCTTCCTCATTGCCACCCGCTATGGAGACGTGCCCATGTTTGTGCCCTATCAGAGCCTGCTGCGCTTCATGATTGACATCGCCACAGGGATGGAGTACCTCAGCTCACAGGGCTTCCTGCACAGAGACCTGGCGGCCCGCAACTGCATGCTGGGGGACGACCTGCGCGTGTGTGTGGCGGACTTCGGCCTGTCCAAGAAAATCTACAGCAGCAACTACTACCGACAGAGGGTGGCCAAGCGCATGCCGGTGAAGTGGATGGCGATGGAGAGCCTAGCGGAGTCGGTGTTCAGCAGCCGCAGCGACGTGTGGTCGTTCGGGGTGACGATGTGGGAGATCGCGTCCCGTGGCCGGACGCCCTACCCTGGGGTTGACAACCACGAGGTCCTGGACCTGCTGGAGTCAGGTCAGCGGCTGAAGGAACCTGCGGACTGCGACGCCGAGCTGTACACGCTGATGCAGAGCTGCTGGTACAGGGAGCCTGGGCGGCGGCCGGACTTCACCGAGCTGAGGGGGAAGCTGCGTGGTCTGTTGGCGGCCCTGCCCCCTCTTCAGGCCACGGAAGAGGCCCACTACCTCAACCAGGGCCTGGAGGCGGCCGCGTGGGGGGCCGGGGACGGGGAGACGGATGAAATGGCAGGGGCCAGGGGCAACCTTTACCTGTCCAGCCCTGGTGCAGCCCCCCCGCGGGATGAGGAGAGGGACCAGCTGTTAACCAAGGGCCAACTCACCGTCGACCTCCCGTAGGGGAAGCAGGGTGGTTGCATTCAGAAGCCATTTTccttgcattttcattttgatttatttctgcctCTGAGCATCTCATGAGTTTTAAGGGTGTGCTGGCTGTGTCTCGGGTGGGGCCCCCTATGGGACAGGCAGGGACAGTAGGAGTGCTATTCCTCACTGAGAAATCAGACAAGGGTTTGCttagtgtgctgtgctgcactggatggggctccagtctggcccctatactatagtGTCATATTGGAGGCTTGTCATGGTTTGCCAAGCAACAGCACCCCCTTGTGACCTGAATGGCAGCTGCGCATTGTTCTCAACTGTTAAATCCAAAAATCATAACATATCGACCATtctaatgtgtaaataaatacagtattttagtttttagagCTAATAACAGGCCTATATATAAAATGTCTAATTATGCAGTTTGATATCTTATCTAAGGGTTAGTTAGAACAGAAATCTCTGCTGGCCAGGATGCTCAGAAGCAGTGGAGGGGGAATTCTGCTGTCATACTCTTCCTCCTCTATGTTGCACAGTGCACTGGACTACATCCATAAACACAACTGATTGACTATGTACTGGTGATTGTCTGCTGGTTTCTTACTATGTGCTGGGCACCGTGTACTCTTATATATCTGATTTTAATATTCTGATATATTTTTAGTAAAGACAATACCAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122658 lncRNA upstream 41518 10529960 ~ 10571890 (+) True G98338
TU122657 lncRNA upstream 72595 10529960 ~ 10540813 (+) False G98338
TU122624 lncRNA upstream 116346 10496836 ~ 10497062 (+) True G98312
TU122623 lncRNA upstream 118457 10494524 ~ 10494951 (+) True G98311
TU122622 lncRNA upstream 119707 10489908 ~ 10493701 (+) True G98310
TU122739 lncRNA downstream 82357 10708421 ~ 10708753 (+) True G98398
TU122777 lncRNA downstream 193684 10819748 ~ 10820170 (+) True G98422
TU122785 lncRNA downstream 267109 10893173 ~ 11227821 (+) False AMCG00015528
TU122795 lncRNA downstream 298068 10924132 ~ 10938566 (+) True G98430
TU122811 lncRNA downstream 362792 10988856 ~ 11019109 (+) True G98442
AMCG00015517 mRNA upstream 9346 10567509 ~ 10604062 (+) True AMCG00015517
AMCG00015513 mRNA upstream 57959 10554666 ~ 10555449 (+) True AMCG00015513
AMCG00015510 mRNA upstream 59952 10547776 ~ 10553456 (+) True AMCG00015510
AMCG00015511 mRNA upstream 66644 10543262 ~ 10546764 (+) True AMCG00015511
AMCG00015509 mRNA upstream 71461 10539920 ~ 10541947 (+) True AMCG00015509
AMCG00015522 mRNA downstream 109295 10735359 ~ 10736975 (+) True AMCG00015522
AMCG00015521 mRNA downstream 113406 10739470 ~ 10742405 (+) True AMCG00015521
AMCG00015520 mRNA downstream 143320 10769384 ~ 10772564 (+) True AMCG00015520
AMCG00015528 mRNA downstream 246606 10872670 ~ 10896165 (+) True AMCG00015528
AMCG00015529 mRNA downstream 285386 10911450 ~ 10922530 (+) True AMCG00015529
TU122613 other upstream 162745 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 296083 10316908 ~ 10317325 (+) True G98251
TU122488 other upstream 396207 10213001 ~ 10217201 (+) False AMCG00015492
TU122332 other upstream 526896 10085428 ~ 10086512 (+) False G98093
TU122743 other downstream 109915 10735979 ~ 10741133 (+) True G98402
TU122817 other downstream 438654 11064718 ~ 11066855 (+) False AMCG00015539
TU122931 other downstream 732088 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 1834520 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 2349575 12975639 ~ 13046813 (+) True G98759

Expression Profile