RNA id: AMCG00015522


Basic Information

Item Value
RNA id AMCG00015522
length 252
RNA type mRNA
GC content 0.65
exon number 4
gene id AMCG00015522
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10735359 ~ 10736975 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACACAGACTCTGCCGCCCGGCAGTGTCACAGCCTGGGGGGGTCGATCCATGAGTTCCCCGAGGACATCTTCACCCCGGAGGAGCGGAGGCATGGCGCCGTCCTGCTGCACgtcctgtgtaaccTGCACCTCAGTGAGGATGTTGCCGGCGCCACTTTCATGGCAGCAGGCAGCTCAGCCCCCGAGCTCTTCACCTCGCTCATCGGTCAGTGCCAGGGcaatggggagggggGGCTGGTTAGCCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122739 lncRNA upstream 26606 10708421 ~ 10708753 (+) True G98398
TU122658 lncRNA upstream 163469 10529960 ~ 10571890 (+) True G98338
TU122657 lncRNA upstream 194546 10529960 ~ 10540813 (+) False G98338
TU122624 lncRNA upstream 238297 10496836 ~ 10497062 (+) True G98312
TU122623 lncRNA upstream 240408 10494524 ~ 10494951 (+) True G98311
TU122777 lncRNA downstream 82773 10819748 ~ 10820170 (+) True G98422
TU122785 lncRNA downstream 156198 10893173 ~ 11227821 (+) False AMCG00015528
TU122795 lncRNA downstream 187157 10924132 ~ 10938566 (+) True G98430
TU122811 lncRNA downstream 251881 10988856 ~ 11019109 (+) True G98442
TU122926 lncRNA downstream 625058 11362033 ~ 11365854 (+) True AMCG00015544
AMCG00015516 mRNA upstream 109295 10613408 ~ 10626064 (+) True AMCG00015516
AMCG00015517 mRNA upstream 131297 10567509 ~ 10604062 (+) True AMCG00015517
AMCG00015513 mRNA upstream 179910 10554666 ~ 10555449 (+) True AMCG00015513
AMCG00015510 mRNA upstream 181903 10547776 ~ 10553456 (+) True AMCG00015510
AMCG00015511 mRNA upstream 188595 10543262 ~ 10546764 (+) True AMCG00015511
AMCG00015521 mRNA downstream 2495 10739470 ~ 10742405 (+) True AMCG00015521
AMCG00015520 mRNA downstream 32409 10769384 ~ 10772564 (+) True AMCG00015520
AMCG00015528 mRNA downstream 135695 10872670 ~ 10896165 (+) True AMCG00015528
AMCG00015529 mRNA downstream 174475 10911450 ~ 10922530 (+) True AMCG00015529
AMCG00015539 mRNA downstream 322515 11059490 ~ 11066584 (+) True AMCG00015539
TU122613 other upstream 284696 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 418034 10316908 ~ 10317325 (+) True G98251
TU122488 other upstream 518158 10213001 ~ 10217201 (+) False AMCG00015492
TU122332 other upstream 648847 10085428 ~ 10086512 (+) False G98093
TU122817 other downstream 327743 11064718 ~ 11066855 (+) False AMCG00015539
TU122931 other downstream 621177 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 1723609 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 2238664 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 2686905 13423880 ~ 13429300 (+) True G98878