RNA id: AMCG00015523


Basic Information

Item Value
RNA id AMCG00015523
length 1294
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00015523
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10798420 ~ 10803527 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTTGGGCTCTCCAAGACCAGGGCAGGGATTGCCCAATATAGCACGCGCGTACGGGGGGAGAGGGGTGGCGGAGTGCGGCTCCTGCCCGGACAGTCAGCGCCTGGCCCGGCTGAGTGACGGTGTGGAGAGCGGGAGGAGCGTCTCCCTGCAGCCCGACTCCTGCGCGCCTCGGCTCGCCGCACCTGCAGCGCCGCCCGGTCCGGTCCGGTCCGGTCCGTGGAGGTCCAGCCGTCTCACCGCCTCTAGTTTGTTCTTTTCACCTCAGAGGACTAAGGTGGGACCGGTTTATAATCCGGACGGCAGCCCGCTGGACAGGTCAGTTCGAGGGGGTGTTGGGCTTGATCCAAACGGCCAGCCCTCATCAACCGGAGTCCTTCCCCACGGGACCGCACCGCCCGCCTCAGCCTGCCCTGCGAGAGAAGCGTTCTCGAGCAGCTACACGAAGACCAGCagtccccacccccccacctctgttAGTCAATCCACCACTCGGAGCCCCCCTACCCACCCCTGCCAAGGCAAGGATCTGTCCTGATTCTGTCCCTTCTGCTCCTGGAAAAACAGCTTCCTCCCCAGAgttagagaaagagagacagagatctataattcattaaaaatctGGAATAGCTtggttgatatttttttaaacttatcctctgatctgtgccttttgagagagagagagagagagagagagagagagagagatccatcTATCTTGTTCTATCTGAGGAGAAGTTTGTTGATATTCTAcatacatcaattaaataaattccttAAACTGATCATAGTGAGaattataatactttttttttttttatataaaacaaccacaaactaaatcaaaaccCTGGATTCTCTAGGCATGTCGGCCAAGGCGCCCATCTACCTGAAGCGGGGCAGCCGCAAGGGCAAGAAAGAGAAGCTGCGGGACCTGCTGTCGTCGGACATGATCAGCCCCCCACTGGGCGACTTCCGCCACACCATCCACATCGGCGGCAGCGGCGGCGAGGACGACGTCTTCGGGGACCTGTCCTTCCTGCAGGGCAAGTTCCACCTGCTGCCGGGCCGGACGGGACACAGCCTGTCCCAGCGCTCCAGCCAGTACGGCGAGCCCTTCCTCTTCACCCGCACCTCCAGCGTCTGCGGCCACCCGGGCAACGGCAGCCCCTGCGCGGACAGCTCCCCCCTGCTGAAGAACGCCATCTCTCTGCCTGTCATCGGGGGGGTGCAGGCCCTCACCCTCCCGTCCGCCCCAGCCCCCACCCCTCAGCCCTCCCCTCCCGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122740 lncRNA downstream 89668 10708421 ~ 10708752 (-) True G98399
TU122734 lncRNA downstream 94025 10667889 ~ 10704395 (-) False AMCG00015519
TU122626 lncRNA downstream 305314 10489579 ~ 10493106 (-) True G98314
TU122588 lncRNA downstream 418371 10378285 ~ 10380049 (-) True AMCG00015501
TU122570 lncRNA downstream 457552 10288026 ~ 10340868 (-) True G98269
TU122857 lncRNA upstream 44762 10848289 ~ 10849258 (-) False AMCG00015524
TU122894 lncRNA upstream 339991 11143518 ~ 11149864 (-) True G98510
TU122914 lncRNA upstream 529136 11332663 ~ 11334847 (-) True AMCG00015540
TU122937 lncRNA upstream 550256 11353783 ~ 11357765 (-) False G98543
TU122939 lncRNA upstream 574486 11378013 ~ 11386199 (-) True G98543
AMCG00015526 mRNA downstream 3152 10776830 ~ 10795268 (-) True AMCG00015526
AMCG00015519 mRNA downstream 130374 10655185 ~ 10668046 (-) True AMCG00015519
AMCG00015518 mRNA downstream 162141 10634915 ~ 10636279 (-) True AMCG00015518
AMCG00015515 mRNA downstream 260384 10530053 ~ 10538036 (-) True AMCG00015515
AMCG00015514 mRNA downstream 293201 10493140 ~ 10505219 (-) True AMCG00015514
AMCG00015525 mRNA upstream 7002 10810529 ~ 10816296 (-) True AMCG00015525
AMCG00015527 mRNA upstream 14152 10817679 ~ 10839852 (-) True AMCG00015527
AMCG00015524 mRNA upstream 40158 10843685 ~ 10849421 (-) True AMCG00015524
AMCG00015531 mRNA upstream 121334 10924861 ~ 10941495 (-) True AMCG00015531
AMCG00015530 mRNA upstream 173888 10977415 ~ 10985210 (-) True AMCG00015530
TU122572 other downstream 457552 10325999 ~ 10340868 (-) False G98269
TU122510 other downstream 599766 10196618 ~ 10198654 (-) False AMCG00015493
TU122879 other upstream 211098 11014625 ~ 11245562 (-) True G98502
TU122882 other upstream 211098 11014625 ~ 11245562 (-) False G98502
TU122884 other upstream 219642 11023169 ~ 11237850 (-) False AMCG00015532
TU122907 other upstream 429788 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other upstream 453751 11257278 ~ 11261168 (-) False AMCG00015535

Expression Profile