RNA id: AMCG00015527


Basic Information

Item Value
RNA id AMCG00015527
length 1002
RNA type mRNA
GC content 0.60
exon number 7
gene id AMCG00015527
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10817679 ~ 10839852 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCATGTCTATGgtgaAGGAGCCATGTCAGATGGAGCAGATAGCTGGAGTGTCATCATTTCCAACATGTGCCTCATCTAACCCTGCTGTGATGGGACCTGTGGTGCCTGTGACAAGCTCGTATGAAATCAACACGTCAGTCACTGCCGCCAGATTCAGTGACAGCCCCGGCCTcaggagcaggagaggaggTGCCGTATCGCCACTATGTCGCATCAAACCCTGTCTTACCGGCGGCCATGTCTGCGCTGCGTCTCTCCGGCGCCTGATGCGCAGTCGGGTCTGCAGCACCTGCGCAGTTCACACCGCGCCTCCCTCGCCGCGCTGTCAGCGCGCCCTCCAGGGCCTGCAGGCGCGCTTTCATGGCGCCGTTTTCTTCTTTACTTCGCGCTATTTCCAGCTGAAAATCGAAGCCAGGATCCCTTACTCTGGAGATCCCAGTGGGGGACAAGCGGGCCTGAACACCTCCTTAGACATGGAAGCTACATCGCATAATTCACAGCCCCCGCTGGCCGTGCAACAGGCGGTAGAAGAGTCACAAAGCGACGGTCGTCTTTGCTGCGGGTTCAGGCGACTCCAGGAAGCGGACCGGCGAGGCTGCCCCGGATCTCCCCCACGGTCCCCCCTCACCCCCAGGGACGCGGCGATGGCGGCGGACACCACTGAGGCGATTCAGACGGAGCTGAAGACCTTTGACGTGAAATGCGAGGACGAGGAGGTGCTGGACAAAATGGTGGAGCAGTGCATGTCTCACCGGATGAAGGGGGAGGACATCGTTCTGGAGTGGGTGGCCTTCAGCACCACCAAGGGAGGCTGGAGCCTGAGCCTGGACTCCCTGGAGCAGTTTGAGCATGAGGTGAAAGAGGGGTCACCGGTGCTCAATAAGAGGGCCAGTAAGTTCCGGCCCAGCATGCTGAAGAAGGACGTGCGAGTGGGCCAGACCAACAGCCTGGAATCCCTCAAAGACCTGTATCCTCCCAGGGGCGATTGGGGGCACTGA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122740 lncRNA downstream 108927 10708421 ~ 10708752 (-) True G98399
TU122734 lncRNA downstream 113284 10667889 ~ 10704395 (-) False AMCG00015519
TU122626 lncRNA downstream 324573 10489579 ~ 10493106 (-) True G98314
TU122588 lncRNA downstream 437630 10378285 ~ 10380049 (-) True AMCG00015501
TU122570 lncRNA downstream 476811 10288026 ~ 10340868 (-) True G98269
TU122857 lncRNA upstream 8437 10848289 ~ 10849258 (-) False AMCG00015524
TU122894 lncRNA upstream 303666 11143518 ~ 11149864 (-) True G98510
TU122914 lncRNA upstream 492811 11332663 ~ 11334847 (-) True AMCG00015540
TU122937 lncRNA upstream 513931 11353783 ~ 11357765 (-) False G98543
TU122939 lncRNA upstream 538161 11378013 ~ 11386199 (-) True G98543
AMCG00015525 mRNA downstream 1383 10810529 ~ 10816296 (-) True AMCG00015525
AMCG00015523 mRNA downstream 14152 10798420 ~ 10803527 (-) True AMCG00015523
AMCG00015526 mRNA downstream 22411 10776830 ~ 10795268 (-) True AMCG00015526
AMCG00015519 mRNA downstream 149633 10655185 ~ 10668046 (-) True AMCG00015519
AMCG00015518 mRNA downstream 181400 10634915 ~ 10636279 (-) True AMCG00015518
AMCG00015524 mRNA upstream 3833 10843685 ~ 10849421 (-) True AMCG00015524
AMCG00015531 mRNA upstream 85009 10924861 ~ 10941495 (-) True AMCG00015531
AMCG00015530 mRNA upstream 137563 10977415 ~ 10985210 (-) True AMCG00015530
AMCG00015534 mRNA upstream 150030 10989882 ~ 10994885 (-) True AMCG00015534
AMCG00015533 mRNA upstream 157697 10997549 ~ 11007375 (-) True AMCG00015533
TU122572 other downstream 476811 10325999 ~ 10340868 (-) False G98269
TU122510 other downstream 619025 10196618 ~ 10198654 (-) False AMCG00015493
TU122879 other upstream 174773 11014625 ~ 11245562 (-) True G98502
TU122882 other upstream 174773 11014625 ~ 11245562 (-) False G98502
TU122884 other upstream 183317 11023169 ~ 11237850 (-) False AMCG00015532
TU122907 other upstream 393463 11233315 ~ 11261168 (-) False AMCG00015535
TU122906 other upstream 417426 11257278 ~ 11261168 (-) False AMCG00015535

Expression Profile