RNA id: AMCG00015529


Basic Information

Item Value
RNA id AMCG00015529
length 1941
RNA type mRNA
GC content 0.61
exon number 14
gene id AMCG00015529
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10911450 ~ 10922530 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCCGACACGATCTGGGCTCGGACAACGTGCTGCACAAGCTGAACGCCACCGACAGGATCCAAGACGGGGAGCTGATCGAGGTGGTGCTGTCAGGCTCTGCCTCCCTGACTGAGCTGAAGCTCCGGCCCCACACCCTGGCCGTCCATTCGTATCGCACCCCCACCTTCTGTCACCACTGCGGGGAGATGCTGTGGGGCCTGGTACGCCAAGGGCTAAAGTgctGCGGACTGGACTTCCACAAGCGATGTGCCATCCGGATCCCCAGTGACTGCAGCCGGGCCAAGCGGCGGTGTGGTCCCAGCCTGTCCCTCTTCCCCACGGGACGTCCCAGGGCCCCTTCCCTCTCCACGCAGGCTGGAGGCAGCCTGGAAGAGATCAGCCAGTCCAAGGCAGGCCAGCGGGCCCGCGCACCCACGTGGACGGGGCATCCTGTGTGGTTTGACCAAGAGGGGGGCAGGGTGAGCGTGCCACACACCTTCCACATCCACACCTACACCCGGCCCACGGTCTGCCAGCACTGCCACAGACTCCTCAAGGGACTCTTCCGCCAGGGACTGCAGTGCTCTGACTGTAAGCTGAACTGCCACCGGCGCTGCGAACCCCTAGTGCCCAGCAACTGCCTGGGAGAGAAGAGTCCAGCCCTGCCTCTCCCGAGCGACAGCACGATGGTCAGAGCAGAGGGGGAGCCAAGCATGGAACAAAGCCCATTCACTGACCCGGAGGAGGCAGATCCACCGTCCCCGATCAGCAACATCCCACTGATGCGAGTGGTGCAGTCCATCCGGCAGACCAAGCGCCGGGACAGCACCGTGCTGAAGGAGGGCTGGCTGGTGCACCACACCTGCACTGACCCGCTGgagCTGTCACTCTCTGAGATCCTGCAGGTCAGAGGCCCCAGGCAGACGTGTGCCTCTACACCCTCTGAGTCCAGTGTCTACTCCTTTGAACTGGTCACCGACTCGCTGGTGTACTGTGTGTCAGAGGTCCAGACAGCTCCAGACGGGGGGTGGGAGCGGGCCATTCGTCAGGCCCTGATGCCCGTCCACAGCTCTGCCGACATGTGCATGGAGAGCCAGGGTGAGTctcggAAGGATATCAGCACAGTCTACCAGATCTTCGCAGACGAGGTCCTGGGATCAGGGCAGTTTGGGATCGTCTATGGAGGGGTGCACAGGAAGTCTGGGCGCAGCGTTGCAGTGAAGGCCATTGACAAGACCAGGTTTCCTACAAGGCAGGAACGCCAACTACGTAACGAGGTGGCCATCCTGCAGATCCTGGAGGCTCTGAGGTACCTGCACTTCAAAAGCATCGTCCACTGCGACCTCAAACCTGAGAACGTACTGCTGGCCTCCCCTGACCCCTTCccacagCTGAAGCTGTGTGACTTCGGCTTCGCACGTATCATTGGGGAGAAGTCGTTCCGCCGATCAGTGGTGGGCACCCCGGCCTACCTGGCTCCTGAGGTGATCAGCGCCCACGGGTACAACCGGTCCCTGGACATGTGGGCGGTGGGTGTGGTGCTCTACGTCAGCCTGAGCGGCACCTTCCCCTTCAATGAGGACGAGGACATCAGCCAGCAGATCCACAACGCAGAGTTCATGTACCCCGAGAAAATCTGGAGTCACATCTCCCCTGAAGCCATCAATCTCATCAATAACCTGCTGCAGGTGCCGGTGAATCGGAGGTTCAGTGTGGGCAAGGCTCTCAATCACCCCTGGCTCCAGGACTACCAGCTATGGTTGGACCTCCGGGAGTTTGAACTGCGCCAAGGCCATCGCTACCTCACCCACCCTGGAGATGAGTCTTGCTGGCAGCTACATGCCCAGGAGTGTGGCCTGCAGTACCCCCCCTACCTCCTGCTCAGGCAGGGCAAGACAGAGGACACTCCAAAGACGCACAGCCTAGGCCTTATAGACCACAGAGGGATACCAGAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122777 lncRNA upstream 91280 10819748 ~ 10820170 (+) True G98422
TU122739 lncRNA upstream 202697 10708421 ~ 10708753 (+) True G98398
TU122658 lncRNA upstream 339560 10529960 ~ 10571890 (+) True G98338
TU122657 lncRNA upstream 370637 10529960 ~ 10540813 (+) False G98338
TU122624 lncRNA upstream 414388 10496836 ~ 10497062 (+) True G98312
TU122795 lncRNA downstream 1602 10924132 ~ 10938566 (+) True G98430
TU122811 lncRNA downstream 66326 10988856 ~ 11019109 (+) True G98442
TU122926 lncRNA downstream 439503 11362033 ~ 11365854 (+) True AMCG00015544
TU122927 lncRNA downstream 439503 11362033 ~ 11416599 (+) False AMCG00015544
TU122970 lncRNA downstream 544322 11466852 ~ 11468628 (+) True G98569
AMCG00015528 mRNA upstream 15285 10872670 ~ 10896165 (+) True AMCG00015528
AMCG00015520 mRNA upstream 138886 10769384 ~ 10772564 (+) True AMCG00015520
AMCG00015521 mRNA upstream 169045 10739470 ~ 10742405 (+) True AMCG00015521
AMCG00015522 mRNA upstream 174475 10735359 ~ 10736975 (+) True AMCG00015522
AMCG00015516 mRNA upstream 285386 10613408 ~ 10626064 (+) True AMCG00015516
AMCG00015539 mRNA downstream 136960 11059490 ~ 11066584 (+) True AMCG00015539
AMCG00015537 mRNA downstream 244757 11167287 ~ 11175559 (+) True AMCG00015537
AMCG00015538 mRNA downstream 414816 11337346 ~ 11342116 (+) True AMCG00015538
AMCG00015546 mRNA downstream 429441 11351971 ~ 11354018 (+) True AMCG00015546
AMCG00015547 mRNA downstream 431541 11354071 ~ 11356899 (+) True AMCG00015547
TU122743 other upstream 170317 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 460787 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 594125 10316908 ~ 10317325 (+) True G98251
TU122488 other upstream 694249 10213001 ~ 10217201 (+) False AMCG00015492
TU122336 other upstream 824938 10085428 ~ 10086512 (+) True G98093
TU122817 other downstream 142188 11064718 ~ 11066855 (+) False AMCG00015539
TU122931 other downstream 435622 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 1538054 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 2053109 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 2501350 13423880 ~ 13429300 (+) True G98878

Expression Profile