RNA id: AMCG00015537


Basic Information

Item Value
RNA id AMCG00015537
length 3639
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00015537
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11167287 ~ 11175559 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCGTGGAGCTGGCCAGCTTGGGCCGGCCCTTCCAGCTGGGCATGCTGTACGACTGCCGCCGGGATGTGCTAATTCCAGATTTCCAGATAATTTCTTCCGACTCCACCGAGGACAAAGCATCAGCTCTGAATGTCGAGGCGTCCCTGGAAGCAAGCTTCCTCTCCGGACTGGTCTCTGTGAAGGGCTCAGCCAGCTATTTACACGACAAGAAGACTTCGAAAAGGCAGTCGCGTGTCACCTTGCAGTATCGCACCACCACCAGGTTTGAGCAGCTCACTATGGACCACTTAGGAGCGGGAAACATACAATACCTTAATGTCTTTCAGGAGGGATCCGCTACTCATGTCGTGACCGCTATTCTGTATGGCGCACAAGCCTTTTTTGTCTTTGACAGGGAGGTGTCCTCAAGTGAAAACCACCAAGAGATCCAAGGCAGTTTACatgctgttattaaaaaaatcccTACGATATCAATCGAAGGCCAAGCATCCCTCAAAATGACAGACAAAGAGCGTGAACAGACAGACAAGTTCAGCTGTAAATTCTATGGGGATTTCGCTCTTGAGAACAATCCGGTGACATTTGAAGATGCCCTGAAGACTTATGCAGTTCTTCCACAATTGCTTGGCAAAGATGGAGAACAGGCCGTGCCCATGAAAGTCTGGCTTTACCCACTGACCAAGCTGGACTCTCAAGCAGCACAGATTGTCAGGCAGATCAGTATAGGGTTAGTTCGCCGTTCACAGCGTATTTTAGATGAACTGGATGATTGTGACGTACAGTGCAAGGATTTGATGAAAGACCCCACTGCTGTCCAGTTCCCTGAGATCAAACGCAAACTGCACAAGTTTAAGGACATGTGTTCAGAGTACAAGCTGGTCTTTCAGAAATCTCTGGCAAAACTTCTGCCCTCCATTCGTGGGGGTGGGGAAGAAGAAGGAAGTCTGGTTGATGTTGTGAACAGCAAAGAACGTTCTCCATTCCAGAATGTCCTGTTGACCGAATTCCTGGAAGACAAGGAGCGGGAGATGAACATGCTAAAATCTTACCTGCAGATTATGAACAACATTCCGGTTGTCTCCTCCAGTAGTGATCTGGACAAAATTGTGCTAGATGCAGTGAATGAGTATGTGCTGTGCTTTGCATTTACATCTTTAAAGCAAAGAGAACAATATTTAACTATCATGGAAAAGTATCTAATGACATCTGAAAAAGCAAAAGGTGAAGATTGGATATCCCAGCTAAGCCATGAACATGGTTCTGAAAAGTGGTTCAGATCAGTGGAGGTACCCACACTGACAAGGCAGAATATTCGATTATTCTTAGACTttgagaaagcaaacaaaagcagCCAGATTGTAAAGTTCTGTGTGGCTTCAATCAATGATGACATCAACATGGGATCTTCAGTTTATCTGTTTGAAAGGGGGGCTTTGGCAAGCAAGCATTTTGAGCTCCCGTCAAAGCCTGGTGTCCCAAAAGTACTGGGAAAAGAGCACGATCGCGTCCACTTACAGCTGCATCCTCCGAAGAATGGTGTCAATGAGATTGTGAAATATCGGGTTCTGTACCAGAAAATGCACGACTCCGTTTGGACAGAAGTAGATAGCAgtgacaaaacaacaaagtttACCGTGTCTGGCCTGGACCTCAATACTTCCTATCAATTCAGCTGCCAGGCAGTCTGCAAGCCAGGAGTTAGCTTCACCAGTGATGCATCAGATTACTGCAAGACACTGCCATCAAGCCCACCTGGAACTCCTCAACAGAAATCCTTAGGACCAAATGCCATCACCATTACTTGGGACATGCCTTTGTCAGTAGGAGAGGAAGTGAGTGTCATTGCCTATGAGGTTGAATACAGGGAGGGTAACAGCACTCCTCATGAGAATGAAACTCAAACATGGATTAAACTTAGAACCACAAGGAGAGAGTGCTCTCTGGAGAATTTAAAGGCAGGCAGTTCCTACATAATACGAATATCTTCAGATTGCGGCAAAGAAGGTAAAAGTCTACCAAGTGCAGTGATGGAAATAACAACTCCAAAAGATTCTGAAGCCAAGCCACAAGATGTAAGCCATATTGAAATACGGAGTGACCATTTCTTAAATTTCTCTGAATTAATACAGAAAGGGCAGCCTTCATTATATAGATTATCACTAGAAAAGGAACCTATGGTCAATGAATATTTCCAGGAGTACACATTTGGGAAGAAAGTAGAAGAAGGGAATAATAAAGTCATCATAGTTCTTGGAGCCACAGGAGCAGGGAAAACCACCCTGATCAATGCAATGATCAATTATGTACTGGGTGTGCAGTGGGGAGATCAATTTCGATACAAATTAATCCATGAGGACACCAACCGCTCTCAGGCTGAAAGTCAAACCTCTATAGTGACGTCCTATGAGCTCCACAACCAGAAGGGGTTCCTTGTCCCCTACTCTATTACAGTTATTGATACACCTGGGTTTGGAGATACCCGAGGACTTTCTCATGACAAGCTGATCACTGAGCAGGTGAAGCAATTTTTTTCCAATCCAGAAGGAGTGGATCACATCGATGCTGTGTGCTTTGTGGTACAGGCTTCGTTGGCTCGGTTGACTTCCATCCAGCAATATGTTTTTGACTCCATTCTTTCCATCTTTGGGAAAGATATTGCAGAGAACATTTTCGTTCTGGTCACATTTGTAGATGGAAAAGACATCCCTGTTTTGAGTGCCATTGAAGCCGCACAGTTGCCCTGCCACAAGAACCAAAAAGGGAAGCCAACTCATTTTGAATTCAACAATTCGGCCATGtacacacagaataaaatactGGAAAGTGATGCTGATGAGGAAGGCTCTGATGAGGATGAGGAATGTGTGGAAGATGACAACCAGCTGGAGAAGATTGTCTGGTCCTCAAATTTTAAGCAAATGAAAAAGTTTTTCAAAACCTTGGAAAAGGTAGAAGGAAAAGATTTAACATTGACCAAGAAAGTGCTGGAGGAGCGAGGGAGGCTGGAAATGGCCATGACCAAACTGCTGCCCCAGATCACAGCTGGGCTGGGAAAGATGAGTGAAATTAAGAAGATTAAGGAATGTCTGGAGAATGAGCAAGCCAACATGGAGCAAAACCAAAATTTTGAAACTGAGATTGTGGAACTAGTCCCAATAAGGCAACGTGCCAATCATATGTCAACAAACTGTAATGGTTGTCGAGTTTCATGTCATCAAGGATGTTTTCTTCCCAGTCAAGATACAATTGAAGTTTGTGCTGCCATGGATGATGAAGGAAATTGTGTAATCTGCCCAGGCCATTGCAACTACTCCTTACACTCACCTGAGATGTTCATATGGAAATATGAAGAGAAGAAAGTTAAGAAGACGGTCAAAGAGTTAAAGGATAACTTTGTTAAGGCTTCTGGAAAATTCATGTCAACAAAGGAGATGCTTGATAAACTTGAAGCTGACTTTCATAAGATTGAAGACAAAATTATGTGGTTAATCAGACTGTCTTCCAATTGTCTCGCTCGGCTGGAAGAAATTGCTTTAAAGCCAAACACTCTCTCCACAGTAGAGTACATCGATCTACTCATCCGCAACgaggaagaggaagggaaaCCCGGCTTTCAGGATCGTGTCTATGACCAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122811 lncRNA upstream 148178 10988856 ~ 11019109 (+) True G98442
TU122795 lncRNA upstream 228721 10924132 ~ 10938566 (+) True G98430
TU122777 lncRNA upstream 347117 10819748 ~ 10820170 (+) True G98422
TU122739 lncRNA upstream 458534 10708421 ~ 10708753 (+) True G98398
TU122658 lncRNA upstream 595397 10529960 ~ 10571890 (+) True G98338
TU122926 lncRNA downstream 186474 11362033 ~ 11365854 (+) True AMCG00015544
TU122927 lncRNA downstream 186474 11362033 ~ 11416599 (+) False AMCG00015544
TU122970 lncRNA downstream 291293 11466852 ~ 11468628 (+) True G98569
TU122993 lncRNA downstream 372006 11547565 ~ 11547819 (+) True G98590
TU123031 lncRNA downstream 1224174 12399733 ~ 12405119 (+) True G98625
AMCG00015539 mRNA upstream 100703 11059490 ~ 11066584 (+) True AMCG00015539
AMCG00015529 mRNA upstream 244757 10911450 ~ 10922530 (+) True AMCG00015529
AMCG00015528 mRNA upstream 271122 10872670 ~ 10896165 (+) True AMCG00015528
AMCG00015520 mRNA upstream 394723 10769384 ~ 10772564 (+) True AMCG00015520
AMCG00015521 mRNA upstream 424882 10739470 ~ 10742405 (+) True AMCG00015521
AMCG00015538 mRNA downstream 161787 11337346 ~ 11342116 (+) True AMCG00015538
AMCG00015546 mRNA downstream 176412 11351971 ~ 11354018 (+) True AMCG00015546
AMCG00015547 mRNA downstream 178512 11354071 ~ 11356899 (+) True AMCG00015547
AMCG00015544 mRNA downstream 183624 11359183 ~ 11362187 (+) False AMCG00015544
AMCG00015545 mRNA downstream 191254 11366813 ~ 11370908 (+) True AMCG00015545
TU122817 other upstream 100432 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 426154 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 716624 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 849962 10316908 ~ 10317325 (+) True G98251
TU122488 other upstream 950086 10213001 ~ 10217201 (+) False AMCG00015492
TU122931 other downstream 182593 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 1285025 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 1800080 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 2248321 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 2257492 13433051 ~ 13437147 (+) True AMCG00015591

Expression Profile