RNA id: AMCG00015542


Basic Information

Item Value
RNA id AMCG00015542
length 2190
RNA type mRNA
GC content 0.58
exon number 18
gene id AMCG00015542
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11393516 ~ 11414518 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGCGGCCTCTGACAGACCAGGAGAAGAGGAAGCAGATCTCCGTGCGGGGGCTGGCCGGAGTGGAAAACGTGACGGATCTGAAGAAGAACTTCAACCGTCACCTCCACTTCACGCTGGTGAAGGACCGCAATGTGTCCACGCCGCGGGATTACTATTTCGCGCTGGCCCACACCGTGCGCGACCACCTGGTGGGCAGGTGGATCCGCACGCAGCAGCACTACTACGAGACGGACCCCAAACGTATTTATTACCTCTCGCTCGAGTTCTACATGGGACGCACTCTGCAGAACACCATGGTGAACCTGGCGCTGGAGAACGCCTGCGATGAGGCCACTTACCAGctggggTTGGACATGGAAGATTTGGAGGAGATCGAGGAGGATGCTGGGTTGGGCAATGGTGGTCTGGGTCGTCTGGCAGCCTGTTTCTTGGACTCAATGGCCACGCTGGGTCTGGCTGCCTACGGCTATGGCATCCGCTATGAGTTCGGCATCTTCAACCAGAAAATTGTGAACGGTTGGCAGgtggAGGAGGCCGATGATTGGCTGCGCTACGGCAACCCCTGGGAGAAGGCCCGCCCCGAGTACATGCTTCCTGTCAACTTCTATGGGCACGTTGAACACACGCCTGACGGGGTGAAGTGGAAAGACACTCagGTAGTCCTCGCGCTGCCCTATGACACCCCAATCCCCGGCTACCGGAACAACACCGTCAACACCATGAGGCTGTGGTCGGCCAAAGCTCCCAACGATTTCAACCTGAAGGACTTCAACGTGGGCGGCTACATCCAGGCGGTACTGGACCGCAACTTGGCGGAGAATATCTCGCGTGTGCTGTATCCCAACGACAACTTCTTCGAGGGGAAGGAGCTGCGTCTGAAGCAGGAGTATTTCGTGGTGGCGGCCACCCTGCAAGACATCATTCGCCGCTTCAAATCCTCTAAATTCGGGAGTCGGGATGCCGTGCGCACCTCCTTTGAAGCCTTCCCTGaaaagGTCGCGATCCAGCTGAATGACACCCACCCCGCCATGGCCATCCCCGAGCTCATGAGGGTGCTGATGGACATAGAAAAACTGCCCTGGGAACAGgcGTGGGACGTGACAGTGCGCACTTGCGCCTACACCAACCACACAGTGCTGCCCGAGGCCCTGGAGCGCTGGCCCATCAGCCTGTTTGAGAGCCTGCTGCCCAGACACCTGCAGATCATCTACGAGATCAACCGACGCCACCTGGAGAAAGTCGCGGCCAAGTACCCGGGAGACAATGACCGCTTGCGCAGGATGTCCCTGGTGGAGGAGGGCGAGCCCAAGAGGATCAACATGGCGCATCTGTGCATCGTGGGTGCCCACGCAGTCAATGGGGTGGCGCGCATCCACTCCGACATCCTCAAAGCCTCTGTCTTTAAGGACTTCTATGAAATGGACCCCGGCAAGTTCCAGAACAAGACGAATGGCATCACCCCCCGGCGCTGGCTAGTGCTGTGCAACCCTGGTCTGGCCGAGGTCATCGCAGAGAGAATCGGAGAGGAGTATATCCGGGACCTGTCCCAGCTGAAGAAGCTGCTGAAGTTTGTGGACGACGAGGGGTTCATCAGAGACGTGGCCAAAGTCAAACAGgagaaCAAGCTGAAGTTCTCAGTGTACCTGGAGAAGGAGTACAAGGTGAAGATCAACCCCAACTCCATGTTTGACCTCCAGAAGGAGCCCAACAAACAGTTTACTCCCAGAACCATCATGATCGGAGGAAAGATCTCCACCGCTGGCACGGAGGCCTCTGGCACCGGGAACATGAAATTCATGGTGAACGGCGCCCTCACCATCGGCACCATGGACGGCGCTAACGTGGAGATGGCAGAGGAGGCGGGTGAGGACAACCTGTTCATCTTCGGCATGAGGGTGGAAGACGTGGAGGCTATGGACCGCACAGGGTATAACGCCAAGGAATACTATGACCGCCTGCCCGAGCTGAAACAGGTGATCGATCAGGTGAACAGCGGCTTCTTCAGCCCCAACCAACCAGATCTCTTCAAGGACATTAACACCAAAGAATGGACCAAGAAGGTGATCCGGAACATCGCCACCTCTGGCAAATTCTCCAGCGACCGCACAATCTCCGAGTACGCCAGGGAGATCTGGGGGGTGGAGCCCAGTCTGGCCAAGCTGGCTGCCCCTGACGATCCCCGCTAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122926 lncRNA upstream 27662 11362033 ~ 11365854 (+) True AMCG00015544
TU122785 lncRNA upstream 165695 10893173 ~ 11227821 (+) False AMCG00015528
TU122811 lncRNA upstream 374407 10988856 ~ 11019109 (+) True G98442
TU122795 lncRNA upstream 454950 10924132 ~ 10938566 (+) True G98430
TU122777 lncRNA upstream 573346 10819748 ~ 10820170 (+) True G98422
TU122970 lncRNA downstream 52334 11466852 ~ 11468628 (+) True G98569
TU122993 lncRNA downstream 133047 11547565 ~ 11547819 (+) True G98590
TU123031 lncRNA downstream 985215 12399733 ~ 12405119 (+) True G98625
TU123159 lncRNA downstream 1397958 12812476 ~ 12812692 (+) True G98731
TU123289 lncRNA downstream 1799352 13213870 ~ 13214646 (+) True G98831
AMCG00015543 mRNA upstream 924 11376597 ~ 11392592 (+) True AMCG00015543
AMCG00015545 mRNA upstream 22608 11366813 ~ 11370908 (+) True AMCG00015545
AMCG00015544 mRNA upstream 31329 11359183 ~ 11362187 (+) False AMCG00015544
AMCG00015547 mRNA upstream 36617 11354071 ~ 11356899 (+) True AMCG00015547
AMCG00015546 mRNA upstream 39498 11351971 ~ 11354018 (+) True AMCG00015546
AMCG00015548 mRNA downstream 27703 11442221 ~ 11465881 (+) True AMCG00015548
AMCG00015549 mRNA downstream 267773 11682291 ~ 11684136 (+) True AMCG00015549
AMCG00015550 mRNA downstream 526968 11941486 ~ 11944469 (+) True AMCG00015550
AMCG00015551 mRNA downstream 579664 11994182 ~ 11998221 (+) True AMCG00015551
AMCG00015552 mRNA downstream 641696 12056214 ~ 12058714 (+) True AMCG00015552
TU122931 other upstream 31773 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 326661 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 652383 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 942853 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 1076191 10316908 ~ 10317325 (+) True G98251
TU123045 other downstream 1046066 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 1561121 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 2009362 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 2018533 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 2018533 13433051 ~ 13435702 (+) False AMCG00015591

Expression Profile