RNA id: TU122927


Basic Information

Item Value
RNA id TU122927
length 1635
lncRNA type read_through
GC content 0.41
exon number 3
gene id AMCG00015544
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11358152 ~ 11416599 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCATGCTACGCTCGAGACCGCAGCCCCGTCCGCCGAGCGCCCCCGGGGGGAGATGGCTACTCGTACGAGCGCTCGCGGCTGTCCCccgtctcctctctctccagaaGCTCCGCGTATGATGTGCCGTGGGCCCAGGACCGCTTCGCATATTAACAACCTCCGCGCGCTGTCAGGTGTATATTTTCCGCGGAAAGGTCCTCGCGATTCCGGAGGTGCGTGCCGTGAAAAAATGCGTCCTCCTTGTCTCACGCGGATCGTGTTTCTGACGCGGTGCGAACGGGAACAACACTTTCGCGGACCACTCGCCAGGGTGTAGATTGATGGCTGTAGATCCCGCTATTCAAATCTTATGAACAGTTCcataacgtgtgtgtgtgtgtgtatatatatatatataatgtatatatttgttactTCAGAGATGCCCACTTCCAAAGTGACTTGCTTATTCCTTATGATTTATGTTAACTTGGACTTGTTTTTCTGCAGATCTCAAGAATTCCTTTGAGGAACATCAGttggtatttatatatatatatatatatatatatatatatatatagtacaaataaatacaaagtcaGTCACTTGGAATATTCTGGATTTTAATCTATACATTGACAACAGCAGTCTCGTTTATCAACACATCCCTGAGTTAAGGATCATTTCTGTCTTCcagccagcagggggcagtgtgaACAAATACTACCCTTgacatgtaatgttttttttgttattgcttttttaatccTACAGTGTATGCACAGTAACAGTGTTTCTTGCTTGTGTGTGAATCCCTGTGTGTTTAGTTATCATTATTACGATTATGCCGGTTATCTAGAAGAGATTTGATTTGAGTCGTGCTTTGCTTTTGGTAACTGTCTCGTctcagtactgtatatttatgtcCTACCTCCGGACCCCTCCCcttgccccccccaccctttaTATATTAAGTAACATTTAAGAAAACTTAATAGTTTGCCTTAACAATTTCACTGAatccagttatttatttttgtagctcAGTGGCACCCCCTTGtgttggtatttttattttgcacacacacagacaaatgttTAACTTTTGATGGATATTTTGATCAGGTAATCActatttgatttcatttatcAAGGCTCCAAATTGATCAGTCACGTGTTTTGGATTTTCTCACTCCTCATCCTACAAACACGTGTTGTTTACCATCCACACTCGCCCAGTTGCCTCCTAGCTCCTCAAAGTCAAGTTAAGTGCTCATCCTTATCTTTCCCTGTCTGTCTTCATGTATTGTGATACTGTGACCCTGTGTAGTTGCAAACAAAATCAGGGTGATCGTGTGTGCGTATGTGCGTCTAAACTTACGTGAGAGTTAGACCGCTAGTCCTGTATTTGTCCTACTGAagcatgtgtgtttaaaaaataaatatatatatatataaatgtatacagtatattttaaaccaGATGACATATGAACAATCTGTCTAATGGTCCTAGCTTCCAAAGAATGTAAAGTGTGGTTCCTTTAGAGGCAGCCTCACagtccaaaacaaaatgtgtgagtTCTGATCTGAAAACAGTTCTGcggaataaaatacaaatttaaaaactcaGACAGGTTTAGACTGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122785 lncRNA upstream 134212 10893173 ~ 11227821 (+) False AMCG00015528
TU122811 lncRNA upstream 342924 10988856 ~ 11019109 (+) True G98442
TU122795 lncRNA upstream 423467 10924132 ~ 10938566 (+) True G98430
TU122777 lncRNA upstream 541863 10819748 ~ 10820170 (+) True G98422
TU122739 lncRNA upstream 653280 10708421 ~ 10708753 (+) True G98398
TU122970 lncRNA downstream 50253 11466852 ~ 11468628 (+) True G98569
TU122993 lncRNA downstream 130966 11547565 ~ 11547819 (+) True G98590
TU123031 lncRNA downstream 983134 12399733 ~ 12405119 (+) True G98625
TU123159 lncRNA downstream 1395877 12812476 ~ 12812692 (+) True G98731
TU123289 lncRNA downstream 1797271 13213870 ~ 13214646 (+) True G98831
AMCG00015547 mRNA upstream 5134 11354071 ~ 11356899 (+) True AMCG00015547
AMCG00015546 mRNA upstream 8015 11351971 ~ 11354018 (+) True AMCG00015546
AMCG00015538 mRNA upstream 19917 11337346 ~ 11342116 (+) True AMCG00015538
AMCG00015537 mRNA upstream 186474 11167287 ~ 11175559 (+) True AMCG00015537
AMCG00015539 mRNA upstream 295449 11059490 ~ 11066584 (+) True AMCG00015539
AMCG00015548 mRNA downstream 25622 11442221 ~ 11465881 (+) True AMCG00015548
AMCG00015549 mRNA downstream 265692 11682291 ~ 11684136 (+) True AMCG00015549
AMCG00015550 mRNA downstream 524887 11941486 ~ 11944469 (+) True AMCG00015550
AMCG00015551 mRNA downstream 577583 11994182 ~ 11998221 (+) True AMCG00015551
AMCG00015552 mRNA downstream 639615 12056214 ~ 12058714 (+) True AMCG00015552
TU122931 other upstream 290 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 295178 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 620900 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 911370 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 1044708 10316908 ~ 10317325 (+) True G98251
TU123045 other downstream 1043985 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 1559040 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 2007281 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 2016452 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 2016452 13433051 ~ 13435702 (+) False AMCG00015591

Expression Profile