RNA id: AMCG00015546


Basic Information

Item Value
RNA id AMCG00015546
length 1153
RNA type mRNA
GC content 0.62
exon number 2
gene id AMCG00015546
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11351971 ~ 11354018 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agcAGCTCGCTTGAGTGGatcagaaaagagaaaaatggtGAAGATTTTTATTGGGAATCTGCCACGCGATGCAACGACGGAAGAGATCCAGTCGTTGTTCTCGCAGTATGGCACGGTGTCGGAGTGTGCCATCATCAAGAATTACGCCTTCGTGCACATGGATGACCGCAAGTGTGCTACCAAGGCCATCCGCAGCCTGCACCTGTACAAGCTTCACGGGGTGCCCATCAACGTGGAGGCCAGCCGCAGCAAGAACCAGGGCACCACCAAGCTGCACGTGGCCAACATCGACAAGGCCTGCACCAACGAGGAGCTGCGGGCCCTGTTTGAGGACTACGGCACGGTGACCGAGTGCGATGTGGTTAAGAATTACGCCTTTGTGCACATGGCCAACTCCGATGAGGCCATGGACGCTATCAAAGCACTTGACAACTCTGACTTCATGGGCAAACGGATTCACGTGCAAATCTCGACCAGCCGCCAGCGAacaggggaggaggaggaggaagaaggatACTTCCAGCAGGGGCCCCCAGGGCGGCCAGAATACTGGCCCCCTAAGTGGGGTGGAGACAGGCCTGAGCCTGGCCCACCTGGCTTTTATGGGGGCAGATTTGGTCCCCCCCAGATGCCACATGGCCCTGCTTACCCACTGCCCCCTCCCCTTCCGCCTCACCCACATTCCCTCCCAAGACGGGCTCCCTACCCAGAGCGTTCCTCATCGTTTGAGCGGGAGCGCTACGGTGTGGTCGACTACTACGAGAAGTACCGAGCCCGTCCTTACGGCATAACCTCTTACGAGGACCGGCGCGTGAGCTCtgtccccccacctccccctcctcctcctcccccccctcctccttcctccGCCCCCATGATGAGAGAGCGTCTGTCTACCTCTGTTCTCGACCCCTACGAGCGGCGCCCGCTGCCCCACATGCCCGGCCCGAGCTCCTCCTTCTACGGCCGAGACCGCAGCCCCATCCGCCGAGCGCCCCAGGGCTCGGCGCCCCCCGTGGGGAACGGCTACGCGTACGAGCGCTCCCGTCTCTCTCCTGTGTCGTCCGTCCCCAGAAGCACCGCGTACAGCCTGCCCCGGCCCAGAGACCCCTACGCTGAACGGGTGCAGCCAATGCCGCAACGCTACGCTTAC

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122785 lncRNA upstream 124150 10893173 ~ 11227821 (+) False AMCG00015528
TU122811 lncRNA upstream 332862 10988856 ~ 11019109 (+) True G98442
TU122795 lncRNA upstream 413405 10924132 ~ 10938566 (+) True G98430
TU122777 lncRNA upstream 531801 10819748 ~ 10820170 (+) True G98422
TU122739 lncRNA upstream 643218 10708421 ~ 10708753 (+) True G98398
TU122926 lncRNA downstream 8015 11362033 ~ 11365854 (+) True AMCG00015544
TU122927 lncRNA downstream 8015 11362033 ~ 11416599 (+) False AMCG00015544
TU122970 lncRNA downstream 112834 11466852 ~ 11468628 (+) True G98569
TU122993 lncRNA downstream 193547 11547565 ~ 11547819 (+) True G98590
TU123031 lncRNA downstream 1045715 12399733 ~ 12405119 (+) True G98625
AMCG00015538 mRNA upstream 9855 11337346 ~ 11342116 (+) True AMCG00015538
AMCG00015537 mRNA upstream 176412 11167287 ~ 11175559 (+) True AMCG00015537
AMCG00015539 mRNA upstream 285387 11059490 ~ 11066584 (+) True AMCG00015539
AMCG00015529 mRNA upstream 429441 10911450 ~ 10922530 (+) True AMCG00015529
AMCG00015528 mRNA upstream 455806 10872670 ~ 10896165 (+) True AMCG00015528
AMCG00015547 mRNA downstream 53 11354071 ~ 11356899 (+) True AMCG00015547
AMCG00015544 mRNA downstream 5165 11359183 ~ 11362187 (+) False AMCG00015544
AMCG00015545 mRNA downstream 12795 11366813 ~ 11370908 (+) True AMCG00015545
AMCG00015543 mRNA downstream 22579 11376597 ~ 11392592 (+) True AMCG00015543
AMCG00015542 mRNA downstream 39498 11393516 ~ 11414518 (+) True AMCG00015542
TU122817 other upstream 285116 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 610838 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 901308 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 1034646 10316908 ~ 10317325 (+) True G98251
TU122488 other upstream 1134770 10213001 ~ 10217201 (+) False AMCG00015492
TU122931 other downstream 4134 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 1106566 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 1621621 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 2069862 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 2079033 13433051 ~ 13437147 (+) True AMCG00015591

Expression Profile