RNA id: AMCG00015547


Basic Information

Item Value
RNA id AMCG00015547
length 2172
RNA type mRNA
GC content 0.40
exon number 2
gene id AMCG00015547
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11354071 ~ 11356899 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGTTCGATTGGGTATTGTGGGTGGGTGGATGGGCGGTTTGCTCTTGGATCTTCCCGCTAGCTTGTCTCATGGATAGACCGGGAAGCTGCCAAGCTCTGGGCGATGGCCTGGCCAGCTGTTTAAACTTCCTCTGTTTGGAATACTTTTCCGTCCGAGGCAAAACCAAGTTTATATTTACCGCAACAAGATCGTCGTTCCCAGCTGCACGTGACGCAATATCAGCCCTTGTGTTCGAGGCGGACCGCTCTTTGTTCGCCTGCGGCTCTAACAGGAAGAACAGTAGCGCAGACTGCTCGTCGTTCTAAAACGCTTTCTCTCGTTCTCGTTCCTCGCTTCACCTAAACcttgtgatttatatatttttatttttttgttgggatgaattgggggtggggggagggtgttttgttttgtttttctttctcaattGAATATTCCATTGCTGCTTGACGCTCTTGAGATGTCACGCAGTTAACTTTTGCTTTCATGTGATAACCTATTACTCAGTAGTCGTGTGGAATACAACACTGTAGATGCGAAGCCTGGGTTTAAACCAGACTTATCAAACTCAGTTCTGAGCGGGCTGTATTGCTATGGTTTTGTTTCCACTGAATtgttacttaattggtctaatttaGAAGATGTAGTcctcaatgttttatttttaatagatgaTTTTGATAAAGACCGTTGTCAAGTTAAAATTTGATCAGTTAAGTAACCGTGACCTTGAGAAGGAAATTAAGCCGAGTGCAGCTGTTCCACAACTGAGGTTTAGAAAGGCTTGTAAAAACCTTTGGAgtaaagattgtatttttttttgtttttgacataaCTTTTTGCGAGCCTGTAAACTTTACTTTAAAAGTTGCTATACTAAACAAAACGTAATTTGCTCAACTTCATTTAATTAAgagaaaacaacccaaaaacCAAAGACTGATCACCTTCATCTGGTCAATTAGCTGCACaggcatttaatttttttttttaatttaatttatttaattttaatttttttaaagtgcgTATCTGCGTTGGTTGGCGCAAGCTGCGACTCAGTGTAAGGAGCAATAAATTAAGCGGGGTGAGAGGCATTGCATATGTGTAAAACTCCAGTTAAATCTGCACAGGCAGTAGGATTTCACAGgaaggaaatgttttttcttttttttttcttttttcagagtTTCAAAGTTTTTAATAAACTGGATTTCAAATGAACGGGGTCATGCTGAGCTTCATTTAACTTATACTTCTCATCTCTCCACATCTTCCGTGTGTCTAGCtagtctttaaataaaatcatttccGACGTGGGATACTTCCTTTTCTTGACATGGAAGCAAAATGCACTTATTTCTTTTCTACAACTTTGCTTATTTTCTTAGCATTCACTTCTAATTTTTCCTGTCTGGCTACAGTAATTACACTTAAATGCTGCTTACAAAATCCAACGTTCCCATTACTTTCTCACTAATGTGGCTGGGCAAACAATCTCTTATTTTCATACATACACTTCAGTTTCCCAGACTTCTTGCTGGTTCAGTTGACTCCTGAAGCTCTCAAATCTAAGAACCTGAGGCGTTgcaataaaacctgaaaaatgtGGCTAGCTTGTAAATCACTCCATCCTAAGTAGTTCCGTAGAGaggaaatcaaaactttgaactCCCACAAGACCTCTCGAAGAAGAGGGACGTCCTCTGCGTCTGTTAGGGTGAAACTATTTTACCGACGCACGTCGTATTGGTTttgccaaaataaaattaatcaaggttggggggagggggactTGAAcgctttcttttaatttctattCCTTGAAAATCTCGAAATTGCATgcctaattaaatcaatttaaggAATTTCGCTGCTGTCCATCTGTGTTCCTTCAAAACTTTTCGCACCTCCGCTGACTTTCCAAAGACTAAATGACCAATGTGTGCATCTTCACTCTCTCCCAATGGGCCCTTCCATTTCACTAGTGCTCTGCTGCCCCCGACTTTCACGTCGTACGTCAACCTTTTAATTTTACACCTCCAGCCAACTTGGATCTGATGATTGTGTGATCTCATAATGGATATTGCAAGCTTTGTGACAGATTTTTCCTTCATAAAGAGAAGTCTCGTTCAAACCGCccccccctgcccctgcccctcccCGAC

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122785 lncRNA upstream 126250 10893173 ~ 11227821 (+) False AMCG00015528
TU122811 lncRNA upstream 334962 10988856 ~ 11019109 (+) True G98442
TU122795 lncRNA upstream 415505 10924132 ~ 10938566 (+) True G98430
TU122777 lncRNA upstream 533901 10819748 ~ 10820170 (+) True G98422
TU122739 lncRNA upstream 645318 10708421 ~ 10708753 (+) True G98398
TU122926 lncRNA downstream 5134 11362033 ~ 11365854 (+) True AMCG00015544
TU122927 lncRNA downstream 5134 11362033 ~ 11416599 (+) False AMCG00015544
TU122970 lncRNA downstream 109953 11466852 ~ 11468628 (+) True G98569
TU122993 lncRNA downstream 190666 11547565 ~ 11547819 (+) True G98590
TU123031 lncRNA downstream 1042834 12399733 ~ 12405119 (+) True G98625
AMCG00015546 mRNA upstream 53 11351971 ~ 11354018 (+) True AMCG00015546
AMCG00015538 mRNA upstream 11955 11337346 ~ 11342116 (+) True AMCG00015538
AMCG00015537 mRNA upstream 178512 11167287 ~ 11175559 (+) True AMCG00015537
AMCG00015539 mRNA upstream 287487 11059490 ~ 11066584 (+) True AMCG00015539
AMCG00015529 mRNA upstream 431541 10911450 ~ 10922530 (+) True AMCG00015529
AMCG00015544 mRNA downstream 2284 11359183 ~ 11362187 (+) False AMCG00015544
AMCG00015545 mRNA downstream 9914 11366813 ~ 11370908 (+) True AMCG00015545
AMCG00015543 mRNA downstream 19698 11376597 ~ 11392592 (+) True AMCG00015543
AMCG00015542 mRNA downstream 36617 11393516 ~ 11414518 (+) True AMCG00015542
AMCG00015548 mRNA downstream 85322 11442221 ~ 11465881 (+) True AMCG00015548
TU122817 other upstream 287216 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 612938 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 903408 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 1036746 10316908 ~ 10317325 (+) True G98251
TU122488 other upstream 1136870 10213001 ~ 10217201 (+) False AMCG00015492
TU122931 other downstream 1253 11358152 ~ 11361743 (+) False AMCG00015544
TU123045 other downstream 1103685 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 1618740 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 2066981 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 2076152 13433051 ~ 13437147 (+) True AMCG00015591

Expression Profile