RNA id: AMCG00015548


Basic Information

Item Value
RNA id AMCG00015548
length 2166
RNA type mRNA
GC content 0.56
exon number 16
gene id AMCG00015548
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11442221 ~ 11465881 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggAGTCCCCGTCCTCAGAGCAGCCGGCGACCGTGGACGAGCTGGTGGAGTCTTCCATTAATGCTTTCGatGATGAAGGGAATCTGAAAGATGTCTCCTTGGTTCGCATGTTCCTGATGATGCACCCCTGGTACATCCCCTCCACTGAACTCGCCAAGAAACTCCTTTCTAAGTACCAGGAGGAAGACTGCTCTGCTGAAACACGGAACCGTATCTGTCACCTGGTCAGatACTGGATCTCGGAGTTTCCCGCCGAATTTGATCTGAACCCCGAGCTGTCTGAGCAGATCAAGGGGCTGAAGGCGTTTCTAGGTGTTGTTGGGGTAGTGTTCAGGGCGTTTTCTAGTGATGTTAAGGGTGTGGTGCTCAGTGTGTGCCGGTATTGTGCTTCCAGGCCCTCGTATGAGTGGAAGAGGCAGGTCACCCAGCGAGTGCCCTCCTTGGGCAAGAAGAGGAAGATGTCTCTGCTGTTTGACCACCTGGACGCCTCCGAGCTGGCCGAGCACCTCACCTACCTGGAGTACAAGTCCTTCTGCAAGATCCTGTTCCAGGACTATCACAGCTTTGTGATGCACGGCTGCACGGTGGACAATCCCGTCCTGGAGCGCTTCATCACCCTGTTCAACAGCGTCTCCCAGTGGATACAGATGATGGTCCTGAGCAAACCCACTGCCTCCCAACGGGCCTCAGTTTTCACCCAGTTCATCCTAGTGGCACAGAAATTGTTGGAGCTGCAGAATTTCAACACTCTGATGGCGGTGGTGGGAGGCCTCAGCAACAGCTCCATCTCCAGGCTGAAGGACACGCAGAGCTTAATCAGTACTGAAATCAACAAGGTCTTTAACAGTCTGACCGAGGTGGTGACATCCTGTGGGAATTACAGCCAGTACAGGAAGCGCTTTGTGGAGTGCGAGGGCTTCCGCTTCCCCATTTTGGGGGTGCACCTGAAGGACCTGATCGCACTGCACGTGGCCCTGCCCGACTGGGCCGACCGGGAGAAGACGCGCATCAACCTGGTCAAGACCCGGCAGCTGTACGCCATGCTGAACGAGCTGGCACAGATCCAGGCCACGCCGCCCGGCATGGAGGCCAACACTGACCTGCTCAACCTGCTCACAGTCAGTACCCCCGCCCTGCCagcccgctctctctctctcgcccctGCACGCTTGCACTCACTCCCACTTTGGccttatatatgcatgtgtctCACAGCCATGGTTAAGACTATGTCCACTTCCACCCCCAGCCCCGCCCCTCAAACCTCCATGATGGATGAGTGGGCATCATCAGTGAAGCCCAAAGCTGACCCAGCTATCATCACCAAACACATCGAGAAGATGGTGGAGTCCGTCTTTAAGAATTTTGACACGAATGGCGACGGACACATCTCCCAGGAAGAGTTCGAGATCATCCGGAACAACTTTCCGTATCTCAGCAAATTTGGGGAGCTGGACCAGAATCAAGATGGGCAAATCAGCCGCGAGGAGATGGTAGATTATTTCATGAAGGCCAGCTCGCTACTCAACTGCAAGATGGGCTTCATCCATACCTTCACGGAGACCACCTATATGAAGCCAACCTTCTGTGAACACTGCGCGGGCTTTATTTGGGGTATCTACAAACAGGGCTATAAGTGCAAAGcTTGCGGTGTGAACTGTCACAAGGCGTGCCGCAGCCGGCTGGCCGTGGAGTGTCGCAAACGGACCAAGAGCATCAGCCTGGAGAGCCCCCCCATGCTGCACTCCCGCTCCTACAGCTTCCCGCCCCCTTCCACCTCGCCCCCCAGCCTGCAGCAGACAGGTACGACCCCCCCCTTCTCTGTACATTGCCTGAAGACTGCAAACTCACTCCAAGCCAGGTACCTTGGTGTTACTGGGAAAAGCCATGCTGAGATGTATCTGGATTGGAGGCAGAGGCCAAAGGAGATTGGGATGAGCTGACTGTCTATGGTTTTCATGGGTGGGACCTCCTTATACTTGGTCGGATCCGATGTCATGTGTGAAAGTTATGGCTTGGAAAGGGCCCAGCTGTGGCACAATGCTCTCAAGTCACTGCACGCCGAGGACAAGGAGGGGCAGCGGGATGAGCCGGACGCGCCGACGGAAGAGTTGAGTTGCGCCCAATGGGGGGGAACAGCAGAGCCTGCCGGAGACGAGCCCTGA

Function

GO: NA

KEGG:

id description
K12361 RASGRP2; RAS guanyl-releasing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122927 lncRNA upstream 25622 11362033 ~ 11416599 (+) False AMCG00015544
TU122926 lncRNA upstream 76367 11362033 ~ 11365854 (+) True AMCG00015544
TU122785 lncRNA upstream 214400 10893173 ~ 11227821 (+) False AMCG00015528
TU122811 lncRNA upstream 423112 10988856 ~ 11019109 (+) True G98442
TU122795 lncRNA upstream 503655 10924132 ~ 10938566 (+) True G98430
TU122970 lncRNA downstream 971 11466852 ~ 11468628 (+) True G98569
TU122993 lncRNA downstream 81684 11547565 ~ 11547819 (+) True G98590
TU123031 lncRNA downstream 933852 12399733 ~ 12405119 (+) True G98625
TU123159 lncRNA downstream 1346595 12812476 ~ 12812692 (+) True G98731
TU123289 lncRNA downstream 1747989 13213870 ~ 13214646 (+) True G98831
AMCG00015542 mRNA upstream 27703 11393516 ~ 11414518 (+) True AMCG00015542
AMCG00015543 mRNA upstream 49629 11376597 ~ 11392592 (+) True AMCG00015543
AMCG00015545 mRNA upstream 71313 11366813 ~ 11370908 (+) True AMCG00015545
AMCG00015544 mRNA upstream 80034 11359183 ~ 11362187 (+) False AMCG00015544
AMCG00015547 mRNA upstream 85322 11354071 ~ 11356899 (+) True AMCG00015547
AMCG00015549 mRNA downstream 216410 11682291 ~ 11684136 (+) True AMCG00015549
AMCG00015550 mRNA downstream 475605 11941486 ~ 11944469 (+) True AMCG00015550
AMCG00015551 mRNA downstream 528301 11994182 ~ 11998221 (+) True AMCG00015551
AMCG00015552 mRNA downstream 590333 12056214 ~ 12058714 (+) True AMCG00015552
AMCG00015553 mRNA downstream 774655 12240536 ~ 12244228 (+) True AMCG00015553
TU122931 other upstream 80478 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 375366 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 701088 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 991558 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 1124896 10316908 ~ 10317325 (+) True G98251
TU123045 other downstream 994703 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 1509758 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 1957999 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 1967170 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 1967170 13433051 ~ 13435702 (+) False AMCG00015591

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00068499 True 2515 mRNA 0.47 13 NC_007118.7 72222542 ~ 72261721 (-)