RNA id: AMCG00015552


Basic Information

Item Value
RNA id AMCG00015552
length 324
RNA type mRNA
GC content 0.61
exon number 3
gene id AMCG00015552
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12056214 ~ 12058714 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGAGCTGCACTGGTCACGAGAGCTGTACATCGGCGGCGTCAGTAAGAACATGTATAACAACCTGCCCAAGCTTATTGCATCCCGGGACGGGTTCCAAGGCTGCCTGGCCTCTGTGGACCTGAATGGGAGACTGCCGGACCTGATAGCGGACGCCCTCCACAGGGTGGGCCAGGTGGAGAGGGGCTGCGAGGGCCCCAGCACCACCTGTACGGAGGACTCCTGCTACAACCAGGGCGTGTGTCTCCAGCAGTGGGAGGGCTTCTCCTGTGACTGCAGCATGACGTCGTATGGGGGATCGTTCTGCAGCGACCGTGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122993 lncRNA upstream 508395 11547565 ~ 11547819 (+) True G98590
TU122970 lncRNA upstream 587586 11466852 ~ 11468628 (+) True G98569
TU122927 lncRNA upstream 639615 11362033 ~ 11416599 (+) False AMCG00015544
TU122926 lncRNA upstream 690360 11362033 ~ 11365854 (+) True AMCG00015544
TU122811 lncRNA upstream 1037105 10988856 ~ 11019109 (+) True G98442
TU123031 lncRNA downstream 341019 12399733 ~ 12405119 (+) True G98625
TU123159 lncRNA downstream 753762 12812476 ~ 12812692 (+) True G98731
TU123289 lncRNA downstream 1155156 13213870 ~ 13214646 (+) True G98831
TU123296 lncRNA downstream 1198385 13257099 ~ 13259347 (+) True G98838
TU123308 lncRNA downstream 1202281 13260995 ~ 13262832 (+) True G98843
AMCG00015551 mRNA upstream 57993 11994182 ~ 11998221 (+) True AMCG00015551
AMCG00015550 mRNA upstream 111745 11941486 ~ 11944469 (+) True AMCG00015550
AMCG00015549 mRNA upstream 372078 11682291 ~ 11684136 (+) True AMCG00015549
AMCG00015548 mRNA upstream 590333 11442221 ~ 11465881 (+) True AMCG00015548
AMCG00015542 mRNA upstream 641696 11393516 ~ 11414518 (+) True AMCG00015542
AMCG00015553 mRNA downstream 181822 12240536 ~ 12244228 (+) True AMCG00015553
AMCG00015554 mRNA downstream 236390 12295104 ~ 12354720 (+) True AMCG00015554
AMCG00015555 mRNA downstream 375452 12434166 ~ 12462123 (+) True AMCG00015555
AMCG00015559 mRNA downstream 436208 12494922 ~ 12497034 (+) True AMCG00015559
AMCG00015558 mRNA downstream 495563 12554277 ~ 12565755 (+) True AMCG00015558
TU122931 other upstream 694471 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 989359 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 1315081 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 1605551 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 1738889 10316908 ~ 10317325 (+) True G98251
TU123045 other downstream 401870 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 916925 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 1365166 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 1374337 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 1374337 13433051 ~ 13435702 (+) False AMCG00015591

Expression Profile