RNA id: AMCG00015553


Basic Information

Item Value
RNA id AMCG00015553
length 321
RNA type mRNA
GC content 0.63
exon number 3
gene id AMCG00015553
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12240536 ~ 12244228 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTCTCTTACACAGGCAACGGGGACCACCTATATCTTCGGGAGAGGAGGAGCACTCATCACGTACACCTGGCCCCCCAATGACCGTCCGAGCACGAGGGCGGACCGGCTGGCGGTCGGCTTCAGCACACAACTCAAGGAAGCCATCTTGGTTCGGGTGGAGAGCGCCTCGGGACTGGGGGACTACCTAGAGCTACACATAAAAGTGACATTCAGCATTATGAGCTCACTTGACCCCAGCTCGTGGCGGGCGGTTGtccaggagaggagaggggccCGGCGGCTGGTGGAGGCATCGGGCCGGGCCGGGCTGGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122993 lncRNA upstream 692717 11547565 ~ 11547819 (+) True G98590
TU122970 lncRNA upstream 771908 11466852 ~ 11468628 (+) True G98569
TU122927 lncRNA upstream 823937 11362033 ~ 11416599 (+) False AMCG00015544
TU122926 lncRNA upstream 874682 11362033 ~ 11365854 (+) True AMCG00015544
TU122811 lncRNA upstream 1221427 10988856 ~ 11019109 (+) True G98442
TU123031 lncRNA downstream 155505 12399733 ~ 12405119 (+) True G98625
TU123159 lncRNA downstream 568248 12812476 ~ 12812692 (+) True G98731
TU123289 lncRNA downstream 969642 13213870 ~ 13214646 (+) True G98831
TU123296 lncRNA downstream 1012871 13257099 ~ 13259347 (+) True G98838
TU123308 lncRNA downstream 1016767 13260995 ~ 13262832 (+) True G98843
AMCG00015552 mRNA upstream 181822 12056214 ~ 12058714 (+) True AMCG00015552
AMCG00015551 mRNA upstream 242315 11994182 ~ 11998221 (+) True AMCG00015551
AMCG00015550 mRNA upstream 296067 11941486 ~ 11944469 (+) True AMCG00015550
AMCG00015549 mRNA upstream 556400 11682291 ~ 11684136 (+) True AMCG00015549
AMCG00015548 mRNA upstream 774655 11442221 ~ 11465881 (+) True AMCG00015548
AMCG00015554 mRNA downstream 50876 12295104 ~ 12354720 (+) True AMCG00015554
AMCG00015555 mRNA downstream 189938 12434166 ~ 12462123 (+) True AMCG00015555
AMCG00015559 mRNA downstream 250694 12494922 ~ 12497034 (+) True AMCG00015559
AMCG00015558 mRNA downstream 310049 12554277 ~ 12565755 (+) True AMCG00015558
AMCG00015563 mRNA downstream 431014 12675242 ~ 12699160 (+) True AMCG00015563
TU122931 other upstream 878793 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 1173681 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 1499403 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 1789873 10448166 ~ 10450663 (+) True G98302
TU122544 other upstream 1923211 10316908 ~ 10317325 (+) True G98251
TU123045 other downstream 216356 12460584 ~ 12462665 (+) False AMCG00015555
TU123193 other downstream 731411 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 1179652 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 1188823 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 1188823 13433051 ~ 13435702 (+) False AMCG00015591

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_03102358_03152576.mRNA True 2224 mRNA 0.54 11 CI01000006 3102358 ~ 3152869 (+)