RNA id: AMCG00015563


Basic Information

Item Value
RNA id AMCG00015563
length 2546
RNA type mRNA
GC content 0.41
exon number 13
gene id AMCG00015563
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12675242 ~ 12699160 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgCTCTTACAGGAGAAAAGCCCTACTTCCAGGAGAAAAACTGTCAGAGTTTCCAAGTCTCTCTGTGAGAAGGAGGTGGCATCTGTTCAGCAGAGACAAGCCACAGTAATCAAGTGCCTACAGAAACTATCTATTCCTTGTGATGCGACTCGCGTGCCCACAATCGCGGTGTTGGGCTCTGGGGGGGGGAATCGTGCCATGGTGTCTCTGATGGGGACGCTGAGTGAGATGAAGACTCAGAACCTGCTGGACTCAATTCTGTACCTGTGTGGAGTGTCGGGATCCACCTGGTGTATGTCAGCTTTGTACAAGGATAAGGAATGGTCCTCTCAAGTGGAGGAGACAGAGAAGAAGATGGTGAAAACACTCACAAGTGAAAAagtttcatttttgaaaatattgggGCGAATCACGGAGGCCGCGTGGGATGAGAACTGTTCTCTGACAGATTTCTGGGCTGGCACTTTGGTTTATTCTTTTGTGAAAAAGgagGACAAGCTGCATCTCTCCAGTAACACAGATGAGACCATGGTGAATCCCTACCCAATCTATGCAGTTGTGGACAAGTGGAGACTGAACAACAAAGATCAATATGACAAAGGACTGTGTGGCAGTGCCATAGGAAACATGAGACACAACATTAAATTTATGATAGATTGGATAATCCATTCCATCTTCAGAGGGGGAACAGTTGAGTTAGAAAACAGGATCATGTCCTTTGAGAAAGGGGTTCACTGTGATTGCaagcactgcactgcagtctTCCTATTGCTCGAGCTACATGAGGCCTTTCATTCTGGGAAAGACTGCAAATCCATTCTCCACTCCTTAATGGCCACCCAGGAAGGGGAAGGCTATAAACTGATGTCGGACATTTTCGAAACATGGGAGGAGAAAATCGATGAggagcaaaacattttagtctCTGAAATCACAGATTTTGTGTGTGGAACAATCCAAGGCAAGTAcataaaaaaagATAATGATGTTGAAGGTAGGAAGCTACTGAGGAAGATGTGCACCCTGTATACGAAATGGATCTGGGGAACAAAGTTCAACTTCATGCGTGAGTTGCTGCACCCAGAGCTCCCTGATGAACTGATTCAAGATGAGACGATTCACCTGATCGACGCTGGCCTGTCCAATAACTGTGCTTACCCACTGGTCCTGAGGGCAGAGAGAAACGTAAAGCTCATCCTGTCCTTCGACTTCAGCGAGGGAGACCCATTCCTGACAGTCCGCCAAGCAGCAGAGTACAGTAAGAAGAACAACATTTCCTTCCCATTCATCCcagaggtgagtgaggaggagaaggcCTGTCCATCTGACTGCTACATCTATAGAGGGAAGAACACGCCCACTGTGATGCACTTCCCTCTCTTCAACAAGGTCAACTGTGGAGATGCAGAAAAGATCAAGAAGACTTGGAAAATTTACACCACAGCAAGATTACAGAATTACACCAAAAAGGAGATAGAAGTTCTCTTAGCAGCTTCTAAGAGCAATGTCCGCAACAACCGAGACAAGATCATCACTGAGATAAAGAAGCAGCTTCCCTTGTGACATCTGCACACAAAAGGCAACAACAACTTTGATAATAAGTCCAAACACTTACTTTTTGGATTTTACTGTTGCTTTTGCTTAACTTTCTGCATTTAGAGCACCAAAGGAAGAAACATGAACATGCTTCATTTTACTATATAATGCATTATAGTATATCTGCCACATTCTGGTTGCTAAcaatttaatcaataaataatacaaataaaatggaaatggaagcTCTGAATAATTGTTAGAACATGTCTGGGAAATCcacatttgatgttttgattaaatctaTAAATCTTAATGCTACAAATCCACAgcaaaattttatttttcacagaattTTGTGAAACTCAACTCTTCTGCAATATAATACTGTgtacacacaacaaaataatgcGATTAAATAGATCTGTTGACACAGCATTGTCTGTCCAGAGCTTTATGGAAAACTTATACCCCTGAAATATATTTCCTGGCCTCAAGTCATGacttataattatttaaatggttatTGTGTACTAAAATGCctactgttatttttgttaccGTACTATTACTACAATTGTTGTTTCATAAAATATCCCAAAGTGTGTGTGGTTGCAGAATGGAATTTGTATTTGGCTCTATTTGGCTATTTGGGACTTTTGTTTTGATCCAGAGCAGTACTCTGTTTCAACTGAAAACAGTGAACAGGCAACACAATACTGGTATCAAACCAAGCCAGTCTTCAGGTCATTCAGGAGTTAATTGTTCACAGATTTTTACATTCTTTTACTAACTTGAATATCTCTCCAGcttctgtttttctgctttCCTTGCATGTGCTCTGATACAGAGATTATTTCCTTTTAGACACTGCTTAGGTACTCTTTTAAGCATATATAGTTTAGGCTTGCTGTGAGGCTTTAGGGAAGGAGATATTGTACGAGGACTGCCCTCTGTGTTGTATCCTGTGTCTTCGGAagccttcaaaataaaatatgcattgatACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123031 lncRNA upstream 270123 12399733 ~ 12405119 (+) True G98625
TU122993 lncRNA upstream 1127423 11547565 ~ 11547819 (+) True G98590
TU122970 lncRNA upstream 1206614 11466852 ~ 11468628 (+) True G98569
TU122927 lncRNA upstream 1258643 11362033 ~ 11416599 (+) False AMCG00015544
TU122926 lncRNA upstream 1309388 11362033 ~ 11365854 (+) True AMCG00015544
TU123159 lncRNA downstream 113316 12812476 ~ 12812692 (+) True G98731
TU123289 lncRNA downstream 514710 13213870 ~ 13214646 (+) True G98831
TU123296 lncRNA downstream 557939 13257099 ~ 13259347 (+) True G98838
TU123308 lncRNA downstream 561835 13260995 ~ 13262832 (+) True G98843
TU123305 lncRNA downstream 561850 13261010 ~ 13262266 (+) False G98843
AMCG00015558 mRNA upstream 109487 12554277 ~ 12565755 (+) True AMCG00015558
AMCG00015559 mRNA upstream 178208 12494922 ~ 12497034 (+) True AMCG00015559
AMCG00015555 mRNA upstream 213119 12434166 ~ 12462123 (+) True AMCG00015555
AMCG00015554 mRNA upstream 320522 12295104 ~ 12354720 (+) True AMCG00015554
AMCG00015553 mRNA upstream 431014 12240536 ~ 12244228 (+) True AMCG00015553
AMCG00015564 mRNA downstream 31542 12730702 ~ 12740233 (+) True AMCG00015564
AMCG00015565 mRNA downstream 47322 12746482 ~ 12749068 (+) True AMCG00015565
AMCG00015567 mRNA downstream 89833 12788993 ~ 12791500 (+) True AMCG00015567
AMCG00015566 mRNA downstream 160876 12860036 ~ 12874762 (+) True AMCG00015566
AMCG00015573 mRNA downstream 187699 12886859 ~ 12896411 (+) True AMCG00015573
TU123045 other upstream 212577 12460584 ~ 12462665 (+) False AMCG00015555
TU122931 other upstream 1313499 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 1608387 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 1934109 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 2224579 10448166 ~ 10450663 (+) True G98302
TU123193 other downstream 276479 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 724720 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 733891 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 733891 13433051 ~ 13435702 (+) False AMCG00015591
TU123364 other downstream 746365 13445525 ~ 13447279 (+) True G98884

Expression Profile