RNA id: AMCG00015565



Basic Information


Item Value
RNA id AMCG00015565
length 498
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00015565
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12746482 ~ 12749068 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGCTCTTACACATGCCTGTTCTGATAAATCCCTCTTCAGAGAATATTCTCCCCAGCGACCTGGTCCAAGATGAGAAGATTTACCTGATAGATGCTGGACTGTCCAATAACTGTGGCTACCCGCTAGTCCTGAGGCCAGAGAGACAAACAGTCCATCAAGCAGCAGAGTACTGTAAGAAGAACAGCATTCCCTTCCCAGACATCCCAGcagtgagtgaggaggagaaggcCTGTCCCTCAGACTGCTACATCTACAGAGGGAAGAACACGCCCACTGTGATGCATTTCCCTCTCTTCAACAGGGTCAACTGTGGAGACTCAAAGAAGATCAAGGCAATGGGGAAAACATACTGTACACGTAAAACGTCCTACAGCAAGAATGAGATACAAGCACTATTAAACAAGAGCAAGCATAACGTGCAGAACAACCATGACAAGATTGTCGCCGAGATACAGAAGGCTGTGGAGGCAGAATGGAAGAAGAACCAGAAATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU123031 lncRNA upstream 341363 12399733 ~ 12405119 (+) True G98625
TU122993 lncRNA upstream 1198663 11547565 ~ 11547819 (+) True G98590
TU122970 lncRNA upstream 1277854 11466852 ~ 11468628 (+) True G98569
TU122927 lncRNA upstream 1329883 11362033 ~ 11416599 (+) False AMCG00015544
TU122926 lncRNA upstream 1380628 11362033 ~ 11365854 (+) True AMCG00015544
TU123159 lncRNA downstream 63408 12812476 ~ 12812692 (+) True G98731
TU123289 lncRNA downstream 464802 13213870 ~ 13214646 (+) True G98831
TU123296 lncRNA downstream 508031 13257099 ~ 13259347 (+) True G98838
TU123308 lncRNA downstream 511927 13260995 ~ 13262832 (+) True G98843
TU123305 lncRNA downstream 511942 13261010 ~ 13262266 (+) False G98843
AMCG00015564 mRNA upstream 6249 12730702 ~ 12740233 (+) True AMCG00015564
AMCG00015563 mRNA upstream 47322 12675242 ~ 12699160 (+) True AMCG00015563
AMCG00015558 mRNA upstream 180727 12554277 ~ 12565755 (+) True AMCG00015558
AMCG00015559 mRNA upstream 249448 12494922 ~ 12497034 (+) True AMCG00015559
AMCG00015555 mRNA upstream 284359 12434166 ~ 12462123 (+) True AMCG00015555
AMCG00015567 mRNA downstream 39925 12788993 ~ 12791500 (+) True AMCG00015567
AMCG00015566 mRNA downstream 110968 12860036 ~ 12874762 (+) True AMCG00015566
AMCG00015573 mRNA downstream 137791 12886859 ~ 12896411 (+) True AMCG00015573
AMCG00015572 mRNA downstream 153864 12902932 ~ 12907957 (+) True AMCG00015572
AMCG00015571 mRNA downstream 165598 12914666 ~ 12922985 (+) True AMCG00015571
TU123045 other upstream 283817 12460584 ~ 12462665 (+) False AMCG00015555
TU122931 other upstream 1384739 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 1679627 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 2005349 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 2295819 10448166 ~ 10450663 (+) True G98302
TU123193 other downstream 226571 12975639 ~ 13046813 (+) True G98759
TU123357 other downstream 674812 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 683983 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 683983 13433051 ~ 13435702 (+) False AMCG00015591
TU123364 other downstream 696457 13445525 ~ 13447279 (+) True G98884

Expression Profile