RNA id: AMCG00015576


Basic Information

Item Value
RNA id AMCG00015576
length 1295
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00015576
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12992232 ~ 13011882 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTGATCCCGGAACTCGGGCTGGTGGGTAGGAATAGCTGTCTTTGTTTTGGTTCAGTATTTCAGTGAGGATAGCGATCTTTTACCTACTGGGGGTGCACTCACAGGTGAATCACGATGTCGGACTCTTCGGTGATGTTCCAAGCCCAGCTCTCCTCCGTCATGGAGATTCTCTTCAAAGCAGCCGTGTACGAGATCACCAAGGTGGTGGAGGGCAGTTTTTCTCACTTCCGTGTGGAGATCGCCCAGGTCAAGAAAGAGAACGAGAGCCTGAGGCTGAGGTTGCAGCTGTCGGAGGCCACGTCTACAGCAGAGCAGTGCTATGGGATCAGTCACATGGGGAAAACGGCACCTTCTGTAACCACACGCAGCATCGGGGTTCAGGTCTGTGAGGAGCACACCAGGAAAGAGTCGGGTGCCGGAATGAAGAGGAAACTTGTTCCAGTTGTGAAGGATGTGTTTGGCAAAGAGTGGTGCAGCAGTCTTTGGGAAGCCAAGGAGCCCAGAACGACAGGGTTTATAGCGGAATCTACAGACTCATGTCCTGTCCATTTTCCTGAGGAGGTGCCTGAGCTACTGGCTGTTCTCATTAAAGAGGAGATGAAAGAGCTTTGGGACCTCAATGttcattgcattttgtatgcatttgatGGACTCCCTGTTGTGATAACAAATGGAACAACTGCACATGGATTtgcagaaaaatacacaaatgtagaAAGCAATTTTGCTCTACATTGTCAGAAAGATGCTGCTGGTTTGCAACAGGGAGAACCAACCCGTAAAGAATTAAGAAATCAAGTTCAGGAACTCTTGAACAGGAAATACgCGGAAGCTGTGGGGTCGAATGATGTCAGGTTGCCTTACAAGCAGGTGGACAAAACAGTGTTTGCAACTGGTTTACCAGAAGGCATTACATTACAGAAGCCAAGCTTTTATGGCAAGGAAAAATTAAAGATGATTCTTCAGGAGGGAAACAACCTGAAAATCCATTTAAAAGAGATGATGACAGAGGTTGACAGTGTTATACCTAGAGTCTCAGCCCCCCAAGAGGTAGACAGCATCATGGCTATTGATACAGTCACAGGGAAAGGAGCACAACTTGTGGGTCGTGCATTCAAGTATCTGTGGAGTGTGGATACtgacaaagggaaaaaaattaagtggtTCCCTGGTGTTATAACTGGGTACAATGCCAAAAGTCAAAGATACTACATAAAGTATGATAATGGAGAGAAAGATGAGTTAGATGGCAGCATTGCTTCAAATAAGAGAATTTTTAGGCTTCGGAcctaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123159 lncRNA upstream 179540 12812476 ~ 12812692 (+) True G98731
TU123031 lncRNA upstream 587113 12399733 ~ 12405119 (+) True G98625
TU122993 lncRNA upstream 1444413 11547565 ~ 11547819 (+) True G98590
TU122970 lncRNA upstream 1523604 11466852 ~ 11468628 (+) True G98569
TU122927 lncRNA upstream 1575633 11362033 ~ 11416599 (+) False AMCG00015544
TU123289 lncRNA downstream 201988 13213870 ~ 13214646 (+) True G98831
TU123296 lncRNA downstream 245217 13257099 ~ 13259347 (+) True G98838
TU123308 lncRNA downstream 249113 13260995 ~ 13262832 (+) True G98843
TU123305 lncRNA downstream 249128 13261010 ~ 13262266 (+) False G98843
TU123353 lncRNA downstream 375194 13387076 ~ 13391419 (+) True G98876
AMCG00015571 mRNA upstream 69247 12914666 ~ 12922985 (+) True AMCG00015571
AMCG00015572 mRNA upstream 84275 12902932 ~ 12907957 (+) True AMCG00015572
AMCG00015573 mRNA upstream 95821 12886859 ~ 12896411 (+) True AMCG00015573
AMCG00015566 mRNA upstream 117470 12860036 ~ 12874762 (+) True AMCG00015566
AMCG00015567 mRNA upstream 200732 12788993 ~ 12791500 (+) True AMCG00015567
AMCG00015581 mRNA downstream 64417 13076299 ~ 13107013 (+) True AMCG00015581
AMCG00015584 mRNA downstream 99445 13111327 ~ 13112802 (+) True AMCG00015584
AMCG00015580 mRNA downstream 142636 13154518 ~ 13155953 (+) True AMCG00015580
AMCG00015583 mRNA downstream 156775 13168657 ~ 13171973 (+) True AMCG00015583
AMCG00015587 mRNA downstream 228309 13240191 ~ 13242891 (+) True AMCG00015587
TU123045 other upstream 529567 12460584 ~ 12462665 (+) False AMCG00015555
TU122931 other upstream 1630489 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 1925377 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 2251099 10735979 ~ 10741133 (+) True G98402
TU122613 other upstream 2541569 10448166 ~ 10450663 (+) True G98302
TU123357 other downstream 411998 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 421169 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 421169 13433051 ~ 13435702 (+) False AMCG00015591
TU123364 other downstream 433643 13445525 ~ 13447279 (+) True G98884
TU123395 other downstream 564314 13576196 ~ 13593370 (+) True AMCG00015602

Expression Profile