RNA id: AMCG00015583


Basic Information

Item Value
RNA id AMCG00015583
length 753
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00015583
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13168657 ~ 13171973 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCCCAAATCAGTGGACGACCAGTACAAGTTATGCCGAGACAAAATGCTGAACAACGTCACACCAAAGGGAGGCCTCTTGGAACGGGAGAGGAGTGAAGATAGTGACTTCAATCAGGAGTGGATCGAGGCCGGGAGCTGTCACAAGCCGGTCCCAGGAGGTATACCTGAACATGCTGTGGCTATTAATGTCTACACTGGTGGCAGAATATACAGACAATTCAACACAGCAGTGCGGACTCAGGGTGAGAGAAGGGAGAGCTACTTAAAGCAATTCCACTACAAGGCCCTGCATTTCCTACTCACCGATGCCCTGCAGTTGTTGAAAGCTCAGGACCCTGGCCTATGCTATCAGGTCTACAGAGGTGTCAATATAACTTTCGAGGCGGAAGAAAACAGCCAGGTGAGGTTTGGCCAGTTTACATCCAGCTCCATGAACAGAGAGGTGGCAGAGGAGCTGTTTGGCAATGCCACAGTCTTCAACATAACAACCTGCCTGGGAGTGAAGATCCAGAACTACTCCTGCATCCCTGAAGAAGAAGAGGTGCTAATCCCTCCATCAGAGACGTTTACAGTGCACTCAGTGCGTGAGACGCTCAAAGGCAGAGTGATCATGCTGAGTCACTGTGGCACCTTCAGTCAACATGAATGCTCCTTTTTCTCCAGCTCCTCTGCCGAGTCGTGCTGctcctctgtgctgctgcttgTGGCCACAGTGAGTGTCTGCGGTGGCCACTGGGCTCCTCTATAG

Function

GO: NA

KEGG:

id description
K19977 ART5; ADP-ribosyltransferase 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123159 lncRNA upstream 355965 12812476 ~ 12812692 (+) True G98731
TU123031 lncRNA upstream 763538 12399733 ~ 12405119 (+) True G98625
TU122993 lncRNA upstream 1620838 11547565 ~ 11547819 (+) True G98590
TU122970 lncRNA upstream 1700029 11466852 ~ 11468628 (+) True G98569
TU122927 lncRNA upstream 1752058 11362033 ~ 11416599 (+) False AMCG00015544
TU123289 lncRNA downstream 41897 13213870 ~ 13214646 (+) True G98831
TU123296 lncRNA downstream 85126 13257099 ~ 13259347 (+) True G98838
TU123308 lncRNA downstream 89022 13260995 ~ 13262832 (+) True G98843
TU123305 lncRNA downstream 89037 13261010 ~ 13262266 (+) False G98843
TU123353 lncRNA downstream 215103 13387076 ~ 13391419 (+) True G98876
AMCG00015580 mRNA upstream 12704 13154518 ~ 13155953 (+) True AMCG00015580
AMCG00015584 mRNA upstream 55855 13111327 ~ 13112802 (+) True AMCG00015584
AMCG00015581 mRNA upstream 61644 13076299 ~ 13107013 (+) True AMCG00015581
AMCG00015576 mRNA upstream 156775 12992232 ~ 13011882 (+) True AMCG00015576
AMCG00015571 mRNA upstream 245672 12914666 ~ 12922985 (+) True AMCG00015571
AMCG00015587 mRNA downstream 68218 13240191 ~ 13242891 (+) True AMCG00015587
AMCG00015585 mRNA downstream 79040 13251013 ~ 13256153 (+) True AMCG00015585
AMCG00015590 mRNA downstream 157609 13329582 ~ 13337434 (+) True AMCG00015590
AMCG00015588 mRNA downstream 179543 13351516 ~ 13366130 (+) True AMCG00015588
AMCG00015591 mRNA downstream 261481 13433454 ~ 13436127 (+) False AMCG00015591
TU123193 other upstream 121844 12975639 ~ 13046813 (+) True G98759
TU123045 other upstream 705992 12460584 ~ 12462665 (+) False AMCG00015555
TU122931 other upstream 1806914 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 2101802 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 2427524 10735979 ~ 10741133 (+) True G98402
TU123357 other downstream 251907 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 261078 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 261078 13433051 ~ 13435702 (+) False AMCG00015591
TU123364 other downstream 273552 13445525 ~ 13447279 (+) True G98884
TU123395 other downstream 404223 13576196 ~ 13593370 (+) True AMCG00015602

Expression Profile