RNA id: AMCG00015584


Basic Information

Item Value
RNA id AMCG00015584
length 438
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00015584
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13111327 ~ 13112802 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCATCAGAAACGGACAGCACCATGTCAGATTCTGTGGCAACTTTCCAATCCCAGCTCTCCTCTGTCCTGGAGATCCTGATCAAAGCAGCGGTTTGTGAGGCAACCAAGCTGTTTGAGGGTTGTTGTGCGGATTTGCAGGTGGAAGTCACCCAGAACAAGAAGGAAATTGAAAGTCTGAAGCTGAGGCTGCAGTGGTCTGAGAGTAAGCTGCGTGCAGAGCGGAAATATACAGCAATCGGGGAGGGGAAGACGGTGCCTTCTGCAAAGAGTCGATGCGTCAGAGTCCAGGACTCACAGGCGATCACAGGGGTTGAACAGAGAGGGACAGTATCTGAAGAATATGCTGAGATGGAAATGGTCATCATTAAAGAGGAGGTCAGTGTCAGGGAAGGAACCCTGGTCCAGATTCTGCACCCCATCCCAGCAGAACTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123159 lncRNA upstream 298635 12812476 ~ 12812692 (+) True G98731
TU123031 lncRNA upstream 706208 12399733 ~ 12405119 (+) True G98625
TU122993 lncRNA upstream 1563508 11547565 ~ 11547819 (+) True G98590
TU122970 lncRNA upstream 1642699 11466852 ~ 11468628 (+) True G98569
TU122927 lncRNA upstream 1694728 11362033 ~ 11416599 (+) False AMCG00015544
TU123289 lncRNA downstream 101068 13213870 ~ 13214646 (+) True G98831
TU123296 lncRNA downstream 144297 13257099 ~ 13259347 (+) True G98838
TU123308 lncRNA downstream 148193 13260995 ~ 13262832 (+) True G98843
TU123305 lncRNA downstream 148208 13261010 ~ 13262266 (+) False G98843
TU123353 lncRNA downstream 274274 13387076 ~ 13391419 (+) True G98876
AMCG00015581 mRNA upstream 4314 13076299 ~ 13107013 (+) True AMCG00015581
AMCG00015576 mRNA upstream 99445 12992232 ~ 13011882 (+) True AMCG00015576
AMCG00015571 mRNA upstream 188342 12914666 ~ 12922985 (+) True AMCG00015571
AMCG00015572 mRNA upstream 203370 12902932 ~ 12907957 (+) True AMCG00015572
AMCG00015573 mRNA upstream 214916 12886859 ~ 12896411 (+) True AMCG00015573
AMCG00015580 mRNA downstream 41716 13154518 ~ 13155953 (+) True AMCG00015580
AMCG00015583 mRNA downstream 55855 13168657 ~ 13171973 (+) True AMCG00015583
AMCG00015587 mRNA downstream 127389 13240191 ~ 13242891 (+) True AMCG00015587
AMCG00015585 mRNA downstream 138211 13251013 ~ 13256153 (+) True AMCG00015585
AMCG00015590 mRNA downstream 216780 13329582 ~ 13337434 (+) True AMCG00015590
TU123193 other upstream 64514 12975639 ~ 13046813 (+) True G98759
TU123045 other upstream 648662 12460584 ~ 12462665 (+) False AMCG00015555
TU122931 other upstream 1749584 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 2044472 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 2370194 10735979 ~ 10741133 (+) True G98402
TU123357 other downstream 311078 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 320249 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 320249 13433051 ~ 13435702 (+) False AMCG00015591
TU123364 other downstream 332723 13445525 ~ 13447279 (+) True G98884
TU123395 other downstream 463394 13576196 ~ 13593370 (+) True AMCG00015602

Expression Profile