RNA id: AMCG00015585


Basic Information

Item Value
RNA id AMCG00015585
length 1316
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00015585
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13251013 ~ 13256153 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGATATTTAACCCAGGCGTGCACGTCATTGCGTTTCATGTTTAGATTATACGGTAAAGATCACCGTCTCTCGCTCGGAAAGCGGAACCCGGCAGTGTATACATGTGCGTGTTTGCGTGCGCCCGTATTTATGGGAAGACAAACACACCAAACGTCTGTTACGACGctttcttaaaaacaacaaaacaaccacGCAAGCCTCCGCGACTGAGCTCCCCGGGATCACGTTTAGGTGGCGATCTCTGCCGCACGGAAGAAGCCCCACCATGTCGGACTCCGTGGCCACTTTTCAGTCGCAGCTCACATCCGTCATGGAGAGTATGGTGCGGGCGGCGATCTACGAGATCACCAAGCTGTACGAGAGCAGCTTTGCGGGCTTCCAGGTGGAAATCGCCCAGAGCAAGAAGGAGATCCAGGCTCTGAGGAGGAGGCTGCCGCTGCCGGAGAGCCAACCGAGGGGCGGCACGAACAAAGCGAGGAAGTCGGCGCCTCCCGCGAATAGCAGCCGCTGCGTCGGCGTGCAGGATGGCGAGGGTACCCCGGGCGGGGAGCCCAGAGAGGCGGCAGCTGGAACCCGGAGAGACAGTCCTCCCCTGATAGATAGAGTATTTGACCAAGACTGGGGCAGCAATCTCTGGGGAACTGGAGAGCCCAGGTCTGAGGAGGCTGGAGAGGAAGTGACTGGACTGTATCCCGCCAACTCTGCTGAGGAATTGGCTGAAGTGGTGTCTGTCATCATTAAAGAGGAGTCTGCTGATATCGAAGAGAACAGGCCCCAGCGGATCCTTATCAAAGATGAGGGATCCAGGGAGGACTCGGACAGCAGTGACGCACAAGGGCGAGGGAGGATCCGCAGGAGACGGTATGGCGACACTGATATGGATAGAGGGGATTCCACCAGCACTGGGGAAAAGGACGGTAAGAACGAGACACTGGCAGCTGAAATGGAGGAGGCGGGTATTCGTAATGCGCCACCAAGACCCCCTTTGGGAACGCCTTACATCAACGTGGAGTTGAACGGTTGGGATTTTGTCCCCACGAAACAGGACATCGAACTGTGGTCTACGCGCTGTGACGAGGACAGAACCCAGATGGAACACATCCAGCAGGAGGCCTTGGCGGGCGGGGAGCAGAAGATCAGGAAGCGCATCTCTCAGGAGTTCACAAAGACTCTCTcagccagagaggaggagggtCCGTTGTTGCAGGCTGTGCCACAACACGGATCCTCCAGCACCCTCCTGCCTCCACTACCGACAAACGTGAATGAAGCGGAGCCCAGTGCCAATATTGAGGGCTGCTACCCTTGCACGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123289 lncRNA upstream 36367 13213870 ~ 13214646 (+) True G98831
TU123159 lncRNA upstream 438321 12812476 ~ 12812692 (+) True G98731
TU123031 lncRNA upstream 845894 12399733 ~ 12405119 (+) True G98625
TU122993 lncRNA upstream 1703194 11547565 ~ 11547819 (+) True G98590
TU122970 lncRNA upstream 1782385 11466852 ~ 11468628 (+) True G98569
TU123296 lncRNA downstream 946 13257099 ~ 13259347 (+) True G98838
TU123308 lncRNA downstream 4842 13260995 ~ 13262832 (+) True G98843
TU123305 lncRNA downstream 4857 13261010 ~ 13262266 (+) False G98843
TU123353 lncRNA downstream 130923 13387076 ~ 13391419 (+) True G98876
TU123368 lncRNA downstream 197734 13453887 ~ 13454126 (+) True G98888
AMCG00015587 mRNA upstream 8122 13240191 ~ 13242891 (+) True AMCG00015587
AMCG00015583 mRNA upstream 79040 13168657 ~ 13171973 (+) True AMCG00015583
AMCG00015580 mRNA upstream 95060 13154518 ~ 13155953 (+) True AMCG00015580
AMCG00015584 mRNA upstream 138211 13111327 ~ 13112802 (+) True AMCG00015584
AMCG00015581 mRNA upstream 144000 13076299 ~ 13107013 (+) True AMCG00015581
AMCG00015590 mRNA downstream 73429 13329582 ~ 13337434 (+) True AMCG00015590
AMCG00015588 mRNA downstream 95363 13351516 ~ 13366130 (+) True AMCG00015588
AMCG00015591 mRNA downstream 177301 13433454 ~ 13436127 (+) False AMCG00015591
AMCG00015597 mRNA downstream 245490 13501643 ~ 13516584 (+) True AMCG00015597
AMCG00015602 mRNA downstream 326963 13583116 ~ 13592136 (+) False AMCG00015602
TU123193 other upstream 204200 12975639 ~ 13046813 (+) True G98759
TU123045 other upstream 788348 12460584 ~ 12462665 (+) False AMCG00015555
TU122931 other upstream 1889270 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 2184158 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 2509880 10735979 ~ 10741133 (+) True G98402
TU123357 other downstream 167727 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 176898 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 176898 13433051 ~ 13435702 (+) False AMCG00015591
TU123364 other downstream 189372 13445525 ~ 13447279 (+) True G98884
TU123395 other downstream 320043 13576196 ~ 13593370 (+) True AMCG00015602

Expression Profile