RNA id: AMCG00015590


Basic Information

Item Value
RNA id AMCG00015590
length 416
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00015590
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13329582 ~ 13337434 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATGACAGGAGAGCTGCAGCGTTTCCCCCCTCTGGGCAGGGTGCTAGTTTCTGGGGGAACCCATGGCAACGAGctggggggtgtgtgtgtggtcaaACACAAGTCCTCAGAGTGTCTTCAAAGACCTTCCTTCACCACCCAGACTCACGCTGTGGACTTCATCTGTGATCTTCACAACACCAGCGCCAACACGCAGAGCTGCCTGATTGCGGGCTTGCCCACTGATTTCCTGTCACTGCAAGCTGCCAGATACCTACAGCGATTGAGATGGGGCCACAGTCTCCAGCCCTTTGATGGTGGAGACCCCATTATTTTCCAGGGGCAGCAGACCCTGTACCCTGTCTTTGTGAACGAGAGCGCCTACTACAGCAAAGGCATCGCTTTCTGGACTACCAGGAAGATCACTCTGGCCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123308 lncRNA upstream 66750 13260995 ~ 13262832 (+) True G98843
TU123305 lncRNA upstream 67316 13261010 ~ 13262266 (+) False G98843
TU123296 lncRNA upstream 70235 13257099 ~ 13259347 (+) True G98838
TU123289 lncRNA upstream 114936 13213870 ~ 13214646 (+) True G98831
TU123159 lncRNA upstream 516890 12812476 ~ 12812692 (+) True G98731
TU123353 lncRNA downstream 49642 13387076 ~ 13391419 (+) True G98876
TU123368 lncRNA downstream 116453 13453887 ~ 13454126 (+) True G98888
TU123361 lncRNA downstream 120695 13458129 ~ 13459786 (+) True G98881
TU123377 lncRNA downstream 156348 13493782 ~ 13516429 (+) True G98889
TU123406 lncRNA downstream 242290 13579724 ~ 13597715 (+) True G98901
AMCG00015585 mRNA upstream 73429 13251013 ~ 13256153 (+) True AMCG00015585
AMCG00015587 mRNA upstream 86691 13240191 ~ 13242891 (+) True AMCG00015587
AMCG00015583 mRNA upstream 157609 13168657 ~ 13171973 (+) True AMCG00015583
AMCG00015580 mRNA upstream 173629 13154518 ~ 13155953 (+) True AMCG00015580
AMCG00015584 mRNA upstream 216780 13111327 ~ 13112802 (+) True AMCG00015584
AMCG00015588 mRNA downstream 14082 13351516 ~ 13366130 (+) True AMCG00015588
AMCG00015591 mRNA downstream 96020 13433454 ~ 13436127 (+) False AMCG00015591
AMCG00015597 mRNA downstream 164209 13501643 ~ 13516584 (+) True AMCG00015597
AMCG00015602 mRNA downstream 245682 13583116 ~ 13592136 (+) False AMCG00015602
AMCG00015600 mRNA downstream 260852 13598286 ~ 13607255 (+) True AMCG00015600
TU123193 other upstream 282769 12975639 ~ 13046813 (+) True G98759
TU123045 other upstream 866917 12460584 ~ 12462665 (+) False AMCG00015555
TU122931 other upstream 1967839 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 2262727 11064718 ~ 11066855 (+) False AMCG00015539
TU122743 other upstream 2588449 10735979 ~ 10741133 (+) True G98402
TU123357 other downstream 86446 13423880 ~ 13429300 (+) True G98878
TU123358 other downstream 95617 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other downstream 95617 13433051 ~ 13435702 (+) False AMCG00015591
TU123364 other downstream 108091 13445525 ~ 13447279 (+) True G98884
TU123395 other downstream 238762 13576196 ~ 13593370 (+) True AMCG00015602

Expression Profile