RNA id: TU123358



Basic Information


Item Value
RNA id TU123358
length 1219
RNA type TUCP
GC content 0.48
exon number 4
gene id AMCG00015591
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13433051 ~ 13437147 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCGCAACAACAACCCCGGCGCACAAagcaaagagaaagaaagcgaGTGAAAAAGCACATGTCACGCGTGTTTCACTCCACAGAAAGGGAGGCAGAGGGAGCTGTCAATATAAAACGGCAGCGCCAGAAAGTGGACAGCTCTACTAAAAGTAAAAGCTCCGTTGCGAGTAGTGCATTCACAGCCCGTTGacaGTTAAAGATGCAGAAAGCAGCTATTGCTCAGCAGGGGGTTGGCATGGGGTTTGCTCCCTTCTGGAAGtCTCACCACAGCAGCAGGATGGTGATCTTCGAGAAGGAGAATTTCCTGGGCCGTAGTGTGGAGCTGTGTGATGACTTCCCCTCCCTGCAGGCCATGGGCTGGTGCAACAATGAAGTGGGCTCCATGCACGTGCAGAGTGGGGCcTGGGTGTGTTACCAGTTCACAGGCTACAGGGGATTCCAGTACATCATGGAGTGCGAGCGGCATAGCGGAGACTACCAGCACTGGAAAAACTGGGGCTCCCACAGCCAGAGCCCCCAGATCCAGTCCATCCGCCGCAtccagcactgagacactgagacaccaAGACCAGAAGACACACATAGACAATAAGACATACTGAGAGACACTGtgtcacaaaaacacacattgagaTACTGACTGAGAAAACAAGACACACTGAGACAATAAGACACACACCAtgacactgactgatacactgactaaCTCAGACACTGGGACACAATAAGACACTGCCATTGTAAGGcacagatgcatttaaacattgtcCAATACACTGAGACTCACTAAAGCACTGAAACTCACCAACACACTGACACCTACACTCTtacacacactgatgcactgacacacacctaGACACATTGATACAacttgacacactgacacacacacttgccAATGGCTTTTATCAGATTTTAAAGGgtaagagacacacacatgcaaaagaCATACAATAGGTGTGTGgactaatgtgtgtgtgtgtgtgtgtgtgtgtgcgtatgtggcTATTCTGCTAGCAATGGTGTAAtggcacaacacacactgcactgagctaCACTGTTCAGCACTGTggcatatacacagtatgagcTCTATAGGGGAACATTACTGTATTAACATGTACCTGCCCTGTACAGACTGAAAATCTACTGCTGTAATGGCTAAGTGTATGAGTGTGGGAACAGCATGGCTAATAAACTCCTGTTCAACTACACTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU123353 lncRNA upstream 41632 13387076 ~ 13391419 (+) True G98876
TU123308 lncRNA upstream 170219 13260995 ~ 13262832 (+) True G98843
TU123305 lncRNA upstream 170785 13261010 ~ 13262266 (+) False G98843
TU123296 lncRNA upstream 173704 13257099 ~ 13259347 (+) True G98838
TU123289 lncRNA upstream 218405 13213870 ~ 13214646 (+) True G98831
TU123368 lncRNA downstream 16740 13453887 ~ 13454126 (+) True G98888
TU123361 lncRNA downstream 20982 13458129 ~ 13459786 (+) True G98881
TU123377 lncRNA downstream 56635 13493782 ~ 13516429 (+) True G98889
TU123406 lncRNA downstream 142577 13579724 ~ 13597715 (+) True G98901
TU123431 lncRNA downstream 353895 13791042 ~ 13810939 (+) True G98918
AMCG00015588 mRNA upstream 66921 13351516 ~ 13366130 (+) True AMCG00015588
AMCG00015590 mRNA upstream 95617 13329582 ~ 13337434 (+) True AMCG00015590
AMCG00015585 mRNA upstream 176898 13251013 ~ 13256153 (+) True AMCG00015585
AMCG00015587 mRNA upstream 190160 13240191 ~ 13242891 (+) True AMCG00015587
AMCG00015583 mRNA upstream 261078 13168657 ~ 13171973 (+) True AMCG00015583
AMCG00015597 mRNA downstream 64496 13501643 ~ 13516584 (+) True AMCG00015597
AMCG00015602 mRNA downstream 145969 13583116 ~ 13592136 (+) False AMCG00015602
AMCG00015600 mRNA downstream 161139 13598286 ~ 13607255 (+) True AMCG00015600
AMCG00015607 mRNA downstream 251943 13689090 ~ 13716822 (+) True AMCG00015607
AMCG00015609 mRNA downstream 365334 13802481 ~ 13821972 (+) True AMCG00015609
TU123357 other upstream 3751 13423880 ~ 13429300 (+) True G98878
TU123193 other upstream 386238 12975639 ~ 13046813 (+) True G98759
TU123045 other upstream 970386 12460584 ~ 12462665 (+) False AMCG00015555
TU122931 other upstream 2071308 11358152 ~ 11361743 (+) False AMCG00015544
TU122817 other upstream 2366196 11064718 ~ 11066855 (+) False AMCG00015539
TU123364 other downstream 8378 13445525 ~ 13447279 (+) True G98884
TU123395 other downstream 139049 13576196 ~ 13593370 (+) True AMCG00015602
TU123399 other downstream 146823 13583970 ~ 13613292 (+) False AMCG00015602
TU123659 other downstream 659798 14096945 ~ 14100855 (+) True G99074
TU124082 other downstream 1611776 15048923 ~ 15179850 (+) False AMCG00015657

Expression Profile