RNA id: AMCG00015600


Basic Information

Item Value
RNA id AMCG00015600
length 1896
RNA type mRNA
GC content 0.50
exon number 9
gene id AMCG00015600
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13598286 ~ 13607255 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTCCCACCTGTGCCCTCGGTCTCTTCCCGTTTCAAAACAGCAGCTCCCAGCATGGTCTCCACTTAAACCCAGTAACCGCTTTTATTTTACGACTCTGTTAAACCAGACTCGGGTTTCGAGAGGAGAGCCGAGTGTTCCCGACGACGAACGAGGAAGGAAAAGTCCTCAGGATGGAGGGACAAAAGGAGGTATTGGAGCGACTGCGCCGCTCGTTCGAGGGGGGTCGGACACGGGGGGCGAAGTACCGGAGGGGGCAGTTGGAAGCGGTGGTGAAGCTTATACATGACAATGAGGCGGCCATACTGGAGGCCCTGCATAGAGACCTGCGCAAGgGTGGTAACTGTGCCATTCTGAAGCCATCAGAAGTCAGTGGAGCCACAGAGAAGCTACTGGCTGAACTGGTCCCCAAATACCTGGACCAGGACTGCTATGCGGTGTTGTGCGGGGGAGCTGAGGAAACCAAAGATTTACTGAAGAACAGATTTGACCACATCTTCTATACAGGCAAGAGCCCCtgtgtgttgtggggggggCTGGACATCCCCTCCGCCGCTCGCCGCCTTGCCTGGGCCAAGTTCTTCAATGCCGGCCAGAGCTGCGTGGCCCCGGACTACGTGCTGTGCCACCCTAAGATTGTTGAACCCCTCCTGGCGGCCCTCAAGGTGACCCTGGAGGAGTTCTATGGCGCCCAGCCCCGGGAGTCGCCCCACTATGGCAGAATGGTGGCTGACCGCCACTGGGACCGAGTGAAGGGGCTGCTGGAGAGGAGTCAGGGGAGGGTGGCCATTGGGGGAGATAGCGACAAGGAGGACAGGTACATAGTGCTGGTGGATGTCGATGAGTCAGACTCTCTGATGGAAGAGGAGATCTTTGGGCCTGTGTTGCCCATTCTGACCATCCCCTCGCTGGACAGCGCTGTGGTTACCACGGTGCTGGAGCGTGCCAGTAGTGGGGGGTTCTGCTCCAACGATGGTATGGTCCAAATGACTTTACCTGGCCTGCCATTTGGAGGTGTAGgtgctAGTGGGATGGGCCGGTACCATGGGCGCTGGGGCTTCGACACATTCTCGCACAGCCGGGCGGTGATGCTGCGGGGGTGGGGCCTGGAGCGGGTCAATGTGCTGCGCTACCCCCCCTACACCCCCCCGCGGCTGAGCTGGCTGCGTTGGGCCACCACCATCTCTCGCAAGGACGGGTGGGGCTGCTCTGTCATGTGACTCTGAGACACCCATACTGATATTAAAACCACTGATATACTGACACTAGTGCTGATAATACTGACTGTAACACTGTTTCTCACGAGTGACGGTGGCTgacagtctgtctctctgtgataCTGACACTCTGTCTCCCTCTTGTGGTTTGTATGCTTTATTGTTGTCTAATCAGTGACTCTACTGtactttattgtgtgtgtgtgtgcatttgtctCGTTCCTtctcagtcagtgtatcagtatTGTTATGCACTATATTTACCCTCTGTCTATTTTTGGTCCAATCAGTGGAAGGTATTTTCTTGTTTACACTaatcatcttaataaaaattaacctttaaaacaaataattacatgaaaCTACTGGAAACCctctatatttaaatgttacagtACAGTTGCTTCAGTCAGTACTTGGACTCCAGGtgtacatacagtacagtgtcgTTACCTGGTTAATCTATACAGTATAGTGGctatatgttttttataaaaaatgttaatgaaacaaacattttggtGTAAATACAATGGGAACTTTAACTATTTGCTTTATTAAACACTGTTTACTATTATAGACATTTACTTcctattacaaatatattgtttaaagcTAATATTGAAATGATAAATGTGTATATCAATATTTTGGTGTGTGGGgcaaaaataaagcagcaa

Function

GO:

id name namespace
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123406 lncRNA upstream 571 13579724 ~ 13597715 (+) True G98901
TU123377 lncRNA upstream 81857 13493782 ~ 13516429 (+) True G98889
TU123361 lncRNA upstream 138500 13458129 ~ 13459786 (+) True G98881
TU123368 lncRNA upstream 144160 13453887 ~ 13454126 (+) True G98888
TU123353 lncRNA upstream 206867 13387076 ~ 13391419 (+) True G98876
TU123431 lncRNA downstream 183787 13791042 ~ 13810939 (+) True G98918
TU123465 lncRNA downstream 274170 13881425 ~ 13884671 (+) True AMCG00015608
TU123466 lncRNA downstream 274170 13881425 ~ 13884671 (+) False AMCG00015608
TU123637 lncRNA downstream 310340 13917595 ~ 13918028 (+) True G99053
TU123640 lncRNA downstream 317993 13925248 ~ 13933503 (+) True G99056
AMCG00015602 mRNA upstream 6150 13583116 ~ 13592136 (+) False AMCG00015602
AMCG00015597 mRNA upstream 81702 13501643 ~ 13516584 (+) True AMCG00015597
AMCG00015591 mRNA upstream 162159 13433454 ~ 13436127 (+) False AMCG00015591
AMCG00015588 mRNA upstream 232156 13351516 ~ 13366130 (+) True AMCG00015588
AMCG00015590 mRNA upstream 260852 13329582 ~ 13337434 (+) True AMCG00015590
AMCG00015607 mRNA downstream 81835 13689090 ~ 13716822 (+) True AMCG00015607
AMCG00015609 mRNA downstream 195226 13802481 ~ 13821972 (+) True AMCG00015609
AMCG00015610 mRNA downstream 225340 13832595 ~ 13834746 (+) True AMCG00015610
AMCG00015608 mRNA downstream 275355 13882610 ~ 13884666 (+) False AMCG00015608
AMCG00015616 mRNA downstream 378288 13985543 ~ 13993089 (+) True AMCG00015616
TU123395 other upstream 4916 13576196 ~ 13593370 (+) True AMCG00015602
TU123364 other upstream 151007 13445525 ~ 13447279 (+) True G98884
TU123358 other upstream 161139 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other upstream 162584 13433051 ~ 13435702 (+) False AMCG00015591
TU123357 other upstream 168986 13423880 ~ 13429300 (+) True G98878
TU123659 other downstream 489690 14096945 ~ 14100855 (+) True G99074
TU124082 other downstream 1441668 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 1706781 15314036 ~ 15314414 (+) True G99475
TU124310 other downstream 2189695 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 2523789 16131044 ~ 16131387 (+) True G99624

Expression Profile