RNA id: TU123572


Basic Information

Item Value
RNA id TU123572
length 271
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id AMCG00015606
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13671315 ~ 13845677 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

Gtcatttgtgaaatgtgtacaaaacaattatagtcagtcagtgtgtctgtactgtattaaccctctctctctcagtgcagtgttaatgtactgtagtgtccagtcagtcagtgtgtctgtactgtattaaccctctctctctcagtgcagtgttaatgtactgtagtgtccagtcagtcagtgtgtctgtgctgtattaaccctctctctctcagtgcagtgttaatgtactgtagtgtccagtcagttgtccagtcagtcagtgtgtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123537 lncRNA downstream 53149 13728676 ~ 13734758 (-) False AMCG00015606
TU123546 lncRNA downstream 53149 13728676 ~ 13734758 (-) False AMCG00015606
TU123550 lncRNA downstream 53149 13728676 ~ 13734758 (-) False AMCG00015606
TU123574 lncRNA downstream 190184 13579725 ~ 13597723 (-) True G99002
TU123527 lncRNA downstream 246950 13538527 ~ 13540957 (-) True G98993
TU123614 lncRNA upstream 23622 13834517 ~ 13840231 (-) False AMCG00015612
TU123615 lncRNA upstream 23622 13834517 ~ 13840231 (-) False AMCG00015612
TU123616 lncRNA upstream 23622 13834517 ~ 13839676 (-) False AMCG00015612
TU123633 lncRNA upstream 72228 13883123 ~ 13884670 (-) True G99049
TU123635 lncRNA upstream 90461 13901356 ~ 13902314 (-) True G99051
AMCG00015604 mRNA downstream 27177 13754068 ~ 13760730 (-) True AMCG00015604
AMCG00015605 mRNA downstream 45672 13740897 ~ 13742235 (-) True AMCG00015605
AMCG00015606 mRNA downstream 49121 13722074 ~ 13738786 (-) False AMCG00015606
AMCG00015601 mRNA downstream 122130 13663657 ~ 13665777 (-) True AMCG00015601
AMCG00015603 mRNA downstream 163202 13606375 ~ 13624705 (-) True AMCG00015603
AMCG00015613 mRNA upstream 16082 13826977 ~ 13829722 (-) True AMCG00015613
AMCG00015612 mRNA upstream 27056 13837951 ~ 13850783 (-) False AMCG00015612
AMCG00015611 mRNA upstream 54956 13865851 ~ 13869990 (-) True AMCG00015611
AMCG00015614 mRNA upstream 246444 14057339 ~ 14076142 (-) True AMCG00015614
AMCG00015615 mRNA upstream 268599 14079494 ~ 14084022 (-) True AMCG00015615
TU123543 other downstream 48788 13671315 ~ 13739119 (-) True AMCG00015606
TU123499 other downstream 328118 13458127 ~ 13459789 (-) False AMCG00015598
TU122943 other downstream 2371245 11414367 ~ 11416662 (-) True G98546
TU122938 other downstream 2401708 11353783 ~ 11386199 (-) False G98543
TU122907 other downstream 2526739 11233315 ~ 11261168 (-) False AMCG00015535
TU123617 other upstream 30334 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other upstream 30334 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other upstream 30334 13841229 ~ 13864738 (-) False AMCG00015612
TU123831 other upstream 515272 14326167 ~ 14334932 (-) False AMCG00015628
TU123851 other upstream 636816 14447711 ~ 14456695 (-) True G99213

Expression Profile