RNA id: AMCG00015607


Basic Information

Item Value
RNA id AMCG00015607
length 7539
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00015607
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13689090 ~ 13716822 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGCAACAGAAGGGAAGTGGGCGTGTCTATCAGACTGTCCCCTGGCTCCTCCCGCTCCTCCTCCTTTCCCCTCTATCTTGGCAATTTGagctgcaggaggaggACTGGCCTCTGCTGAGGTCGGACCTGCGTACTCTGCACAGTCTGGAGGGGCTGGCGGAACGAACCACTTATGGAAAGGAGGAGGcgggggagatggagagagttgAGTCCAGaaatGCCGCTGGATTAGGTAACAGGTTCCTGAAGCAGCCCATGAGTCTGTTAGATGATCTAAAAGGATGCCAGAACTATGCCCAGTGTCTTTCCGATCATAATCAGGATTTCAATGAATTCCTTCGTGAAATTGAGAGGCAGAGAGCGACAGACACTCTGCTGTCTGCGTCTGAGGTCTCCAGCTCATATTACCTCAAAGTCCTTCTGATGCTGGATGAGGAGACAGAGACATATAGGAAGGCGATGGAGGAGTACAGCCTggaccctgactggtctgtccTGGTCAATCCGGCCTGCTTGGCCAATGACACCTGCCTGCCCATAGCTGACCTCTACACTTTGGTGAAAGTGATTGGCAAGACCAACAATCCTGACCATTCCTTGTCTGGCTACACGGGTTCGAAGTTGGCCAAGCTGCTTCTGCGACCAGCCTTcagaaatgcagggctctactCCCTGGGGAATAGCACTGTGCCAGCTTTGAGATCTTACCTCCTGAATGACCTTAAATTGCATGGGAGGGATGCAGTGGTGGAGACAGAGGGAAACAACAAGGTGTTCTACCATACACTGGACAGGGACGGCTGTCCCACTAAGCTCTACAAATCAAAAACAGCCACTGACCCCAACACACGCTATGACAAGCAGcacattgtcatgctggaagaTGACACAGTAGCAAGGGAGGCTGCCCAGTTCCTGTTTGAGAAGCACCCCACTGTGTCCACCCTCTATGTCCTGGAGAATGGGCTCCCAAAGCGGATCAAGGGGCAGCTGGGCTCCCTGACTGAGGACAGTCGGCTGGTGCTGGTGGGACATGGGAGGAAGAATGGGGTGAGCGGAGAGACCAGGCTGGGGGGGTATGGGGCGCAGGACATAGCAGAGATTGTGAGCCGAGTGCCGAGGGAGGGGGTACAAATTAAGACAGTGAGTGTGGTGGGCTGTGATGTGGGGAAGGATCAAACATTTGTGGATGCCCTCCTTCGGGAGCTCCGGACCAGACAAGTAGAAACTGAGCTCCACCTGAGGAGCTCCCTTGTTGAGGTCAGACACTCAGGTGAGAAAGTCACTGCTGAGCTGACGCCCTTGGGGCTAGAGTACAGACTCAAGGATGCCAGCAAGAAAGTGGTAGCTAAGCTGGACAGGGAGGGGAGGACCATTACCATAGAGGAACCTGGAGAAAGAGGTAGGGTGGTTTACAGTGACAAAAGGAATTTCCTGATGAATCAAGCCAAAGATCAGAAACAACTCCAAAACTGGGAGAATTTCAAAATCGAATGGCCAAATAGACCACTGAAGTTTGTAGACCAAAACATGCGTATGGAGAGCACTGATGTTCTTGAAGGCCTAGCCTGGGCCTTTTTTAAAGATGTCAAGGGGAGAGCACCACTTGCAGTCTACGATCTTAGGAATGAGCACTATGTCCTTAAAGAGAGTGAGATGAGTTCTTGGCTCAAAAATAATGAGATCGAGGAGGTTTTGAAGCACTGCCGTAAGATCAACACAGCCGAGGATCTAGTGAAGGAAATCCACCACAATGCCAGGATTGGAGAAACAGAGAACACGTATTACAATTTACAGGACTGGATTTACCAGGTGAACCCCAGGAATCTATATGTGTATTTAGTGGGGAAGAAGTTAAGGACAGAAGTGGACACCGAGCAGGTAAAAAGACTATTAGAAAATCAAATCCAAGCAGTCAACAACCAAATTCCTCCTATAAATTGGGAGGAGGTGAGAAAGGCTTCCAATTTAGAGACTGTCAAAAGCCTACTGAGAAGtcatttttctaaaacaaagtTTAAAGTGGTCAAAGACATTCTCAACAAAAATAGTATCTTCAAAGTAGATGTGAAGAATAAAGAAGAGGTGAAGAATATCATAGATGGTCACAAAGATAAGGAGAAATATCCAGACATCCGTGGAAACATAAAAGAACAGGATCTCCTTATGCCTGTGTCAGAGATTGGCCGAATTGAGAGTGTGATTCAAAAGTGTGTGGTCAATCAAAGAAGATTACAGATGAACAAGCAGGCAAACCGAGGCAAAACAGTGAAAGAGTTCCTTCACCAGCAGTATCCGTATCGTTATAACAAAATACGCAATGAGGTCAATATGGAGGACTACGTCAGATACATAAAGGATACTTTACAGGGGGGTTACCAGTCAGGGCTGCACTCTCTAGAAAAGGAGTCATGGCTGGGGAGGTACTTCATGGCATCTGTTTTTGCCGAATCTGCTCGCAATTTCCGAACCTTCCCCGTGATCCTGATGGCTTTGGATGGCTACCAGAATGGACAGAACCATGAGTTCATCACGTTCCTATTTGATGAACACCCAATGGCCAGGGGGGGCACCTGGGTGGATTCCAGTCGACGAGGGTTCTGGGGTTCCAGTCGTACAGAGAAATCAAGTAAATTATATAACATGATAAATCGAAAGACAGAACGTGAACTACAAATGGACCTGAGCAATTTAATactgagggaaaataaaatctacactAAATGGCTTGCTCAGAATCAGGGCCAAGAAGAATTTAATAGTTTGCTGGAAAGTCTTAATCAAGCATACAGGGACAAACAGAAAGAGACTATCAGGACTTCTTATGAGGAATTTAAAGATATCATCAATAGAGACCCACAAGACAGTATGTCATCCGGCCACTTCCTTGGGGGTGCAGATGATGGAGTTGTCACTGCCCACGATCTTCTGTCTGCATCGGGGACGGAGCATTCCCTAGAGCTCTCGGCCTATCACTCTCGAGCCAAGGTAGTCCTGAGTAGGCAGATCCACGAGAAGCTGCAGGTGCATTTCAGAGGAGAAAGAGCAGGAGAGTACTCTGTGGACCCCAAGTCCGTCCGTGTAGAAGAGGGACAGTTCAGATGTCAGCTGATTTCCCAGAAGTCTCCTGGGAGGAACTTGGAGTGGGCTGTGAAATTGAACACAGAGGGGCTGAAGCACATGGAGAAAGTCTTGGAGATGATCCAGGAAGTGGGCAGCACAGAGATTTCAGAGAGGGGCAACCCCCTGCATGTCTCTGAGCACTTGGAACGAACAGGGAAAGCAGTTGCAGTGGTTGGGCTGATGTTGGGCCTGCAAGGGGCCATCCGTTCCTTCGAGGAAGGGGATGTGGAGCACGGCAGTGTCACAGCTCTGCAGACAGTTCATGGGGTTACTGCCATGACAGCTGCCGCCATGGGGAATCTGGCGAAGAGCACTAACGCTTTAACCAACAGACCGATACAAGTCATGGTCAAATTGGTCAGCAACCCAGTGTCCAAGAGAGCTCTGGTGGCCATTCCTGTGGTTGGGATCGGGATAGGGATTTATAACATCAAGGAGGACCTTAAGAGGAAGGACACTCTGGGATATATCGATGCAGCCCTAGATGCCACCATAGTTGCATTGGATGTTGTGGAGATGGGGGCTCCAGTGCTTGTCCCCGTTTTGGTCCCGGTCAATCTTGCCCTGTCTGTTGTACGGATGGCCTTTGATGATGTATACCTGGATGTCCAGACTGAGCTGGCCAAGCTTCCAAAGGATGCTGGATTTCTGCAGAAGCTAGGAGCTGCACTGAAGGGATTAGGAATGGGAATCCTGCACTTTGAAATGGATGTAGCAAGTTTTTTCTACACCATCCCCTATCGTGAGATCGAGGAAGGACACCACCTGGTGGAGCAGATCTCAGACTACCACAGGTACTACACCGTCCAGGTGGAGAAAGGTGGGAAGAGGGCCATAGACTTTGCAGGAGCAGAAGACTCCTGGAATGCCGGGAACATCACCTTCCACCTCTTTGACAATGGTAGCTCCCAGTTCTGCCTGGATAAGTTTATCTCCTCGAAGTCCAAGTTTGGAAAGCAATGTTGGGAACTGCAGACTGATGGGAAGATCCAGGACATTGTTCTAGGAATGGGGGAATCACACCACCTGAAATACAGCCACATCCAACGCAAGGTTCTGCTATTCATTCCAGCAGGCTCCACGACTGTGGTTTCAGGATATGAGGTGGAGTCCCACACAAGGTTTGGGACATATTACGGCAACCAGAAGGCTAATAATTTTTTCACCGTTCAGGAAGCCAAGGATGAGAAGATACCCAAGCTCATGTTGAGTTATTATTATCAGCTCTATGGGGAGAATGGAGATGATATCTTCTTCTTAGGACCCCAGAGGAGCTATGTAGAGGGGCGAGCGGGACGGGACACCTACATCATCCCTGCTAGCGGTGGAAACACCATCATCAACAACTCTGATCCAGAGAAGACTGAGGACATGTTAATGATCAAAGTCCCATATGAGAAAATATCAGTCAGCAGATCTGGGAAGCACATTATCCTGTCCTTCCTGGGAAGCCACCATGTAAAAGTCCTTGAATGGTTCTCTGGGGAGGAGTACCGCCACATGAAGATGGTATCGGGTGATGGTGTCCTGTTTGATGTCTCCATCCTTGCCATCGCCACCCCCCACCTTGTCGCCCGAGGAGTGAACAAGATGCAGGAGAAGAGTGGGCAAGTTGTGGACACCACTCATTCTCTCCTCGGAAACGTCACCAACATCGTCGGCTCAGCTTACAGTGACAAACTGATCGGAAACAAGCAAAATAACCTTATAgccgggggaggggggaaggaTTACATGAAAGGAGGAGAAGGGGAGGACACCTATGTGGTCCAGAAAAGAGAGGGCATGTCAGTGAAGATTGATAACTTTTCCACTGACAATAAAACTGACCTGTTGCTGGTGGAGGCAGAGTTACACAACTTGAGAGCTGCTGTTTTAAGGGATGACCTGGTTTTGTTATTCTCACCATGGCCAACCTCCTCTTTTGTCACACTGCTCAACTGGTTTCATTCTGAACAGCACAGGCACCTGCTCATTGTCACCCAGGATTTTGTAACACTCACTGTGTCAGAGAAAAAAACTTCCTGCTGGTATCCCAGAAACCAATTTCAGTCGGAATGCCTCCTCAGTCAGAACATGGATTACAGTAAATCCAATATCCCTCTGCTGGTCGATCTGGATAGTGACATGGCCCTGCAGGGAGTGACAGAAGTGCATGGCTCCAATTTTAATGACAGAATCAAAGGGAATGCAAAGGACAATGTGATCACCCCTGGAAGAGGTCAGGATTTCCTTAGTGGAGGAAGAGGGGCAGACAAGTATATCATCACCGTGAAACAGGGGCTCAAAACCATAGACAACTTTTCACCAAATGGGGTAACTGATGAGCTGTTCTTGAGAGAgggttatttaaatattgatgcTCAATGCAGAAACAAAGATATGGTGCTGTCTGTGAACAAGATAAACACGGTCATCCTGAAGCAGTGGTTTGAGAGCAGCTCCTTCCGACACCTACATGTCTATACGGCTGATGGGTTCAGGTTCACCTTGACGGATAATGTTAGTGACTGCGGCCAACACTTTTTGAAAATACCACTCTCTCTGGACTTCAGGCAGAGGAAGGGAGGAGCAATGATAAACATGTCCAATGGTGAGTTCTCTGCAGTGGTGGAGATGTACGGCTCACTAGGTTATGACAAGATGATTGGGAATGGGCAGGACAACATACTGGACCCAGGGCCAGGTGGGGCATGGATGCAGGGTGGAGAGGGGGCTGATACTTACATGCTGAAACCAGGCTATGATGGCAAGTTTGAGATCTTTAACTTTGCATTAGACCAACGGGAAGACACGGTGATGTTACCAGTGGATTTCCTGAGTGGGACTGATTCCATCTGGGCTGACTTTCTTGACTTGGTGGTAAACTGGAGGGTGCAGGGTAAAGACCTGAGCATCAGGCTTATAAAATATGGAGCTGGGCCCAGTTACCAGCACCTTTCCTTCCACACTTCCAATGGTGTCCTCTTCCGGTTCAGCTACCTTTCAGGATACACCAGCTCTCTCAGACCAGAACCCCAGATTGTGGCCTACAAAGTGGACCTACAGGGCAAACAGGAAGAGCAGCAGTGGGACCTCAGCAGTGACCCCCGTCTCTTCTCTGTGGAAACTGTACAgggctctctctcacactctaaTCACATCCACGGCAATAAGAGACAGAACGTGTTgctgggggggggcggggatGATGCGCTGGATGGGGCAGAAGGGGACGATACACTGGTGGGTGGCCAGGGGAAGGACATCCTGATGGGGGGCGAAGGGGACGACACTGTTTATGGCGAAGAGGGGGATGACTACTTAGTGGGTGATGGCGGACACGATGTCCTCGTCCCTGGACCTGGGAAAGACATGGTGGATGGGGGACCAGGAAGGGACACAGTGCTGTACCAGGGTGACCCAGAGACGGGCAGAGGAGTTTATGTCAATCTGCTAAgtggggagggcagggggggtGACGCAGAAGGAGATGTCCTGCGAGACGTGGAGAATGTGATCGGCTCCATCTACTCCGACTTGCTGGTCTCGGGCTATGAGGGGAGCCTGCTCAAGGGGAAGGCTGGCAACGATGTCCTGGTCTCTCTTGGAGGAGGGGACTACCTGATTGGGGGGGAAGGCAGTGACATCTACCTGCTGGACCCTGTCAGCGGCCTGGTGACCATTGACAACTGTGCCAAGGACAACGCCACAGACATCGTCTACCTCCGCTCCCTATCCTCCCAAGCTGTTAACTGCCAAATCCAGACACATGGCATCGTCCTGACTCTTCAGGGCCCCCATGCGCCCAACACTGAAGTCGTCCTGCCCACGTGGAACAACCACCCCAGCTGTCACCACCTGCAGCGCAGCGGCGGGAGATCAGGGCTGGggatctgtctgtctctgtttgtcctTCTGTCCATGCCTGCGAAGAGGAGAGGAGCTCTGTATACAGCAGGAGAGAAAATGGGCATCCCCTCTGCCCAGTCAGCCAGATTCTCCACAGAGGGGGAGAAGACACCTTACAATGACAGGCTTGGCAGAGAAGAGACGAGGGCACACCCAGTCATGATGTTTCCCCAGCTGGACAAACGCCAGTCAGTGGACATAACTGTAGAGCTGAAGACAGCGGGAGAGACGAGCTCAGACACTCTGAGATGTTGTACTGTGGGCAGTGATGGGACATTGACTTTGTCTGATGTCATTGCCCTCAATGGGGATGGGTTCCTGAGACTCAATGTGTCAGAGTGGCGCTGGGAGGCCCAGTCTTGGTCTCGCTCTGCCCAGGCTGAGAGCATTCAGAGCAGCTGGAACTCACAGGAGCGTCTGATCAGGAGAGACAAGGACTTCCTGCAGCAGGAGGGTGTGGAGTGGCTGAAGACACTGTGGACAGCCAGACAGAAGAGCTCCAGTCACACTGGTGAGAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123406 lncRNA upstream 91375 13579724 ~ 13597715 (+) True G98901
TU123377 lncRNA upstream 172661 13493782 ~ 13516429 (+) True G98889
TU123361 lncRNA upstream 229304 13458129 ~ 13459786 (+) True G98881
TU123368 lncRNA upstream 234964 13453887 ~ 13454126 (+) True G98888
TU123353 lncRNA upstream 297671 13387076 ~ 13391419 (+) True G98876
TU123431 lncRNA downstream 74220 13791042 ~ 13810939 (+) True G98918
TU123465 lncRNA downstream 164603 13881425 ~ 13884671 (+) True AMCG00015608
TU123466 lncRNA downstream 164603 13881425 ~ 13884671 (+) False AMCG00015608
TU123637 lncRNA downstream 200773 13917595 ~ 13918028 (+) True G99053
TU123640 lncRNA downstream 208426 13925248 ~ 13933503 (+) True G99056
AMCG00015600 mRNA upstream 81835 13598286 ~ 13607255 (+) True AMCG00015600
AMCG00015602 mRNA upstream 96954 13583116 ~ 13592136 (+) False AMCG00015602
AMCG00015597 mRNA upstream 172506 13501643 ~ 13516584 (+) True AMCG00015597
AMCG00015591 mRNA upstream 252963 13433454 ~ 13436127 (+) False AMCG00015591
AMCG00015588 mRNA upstream 322960 13351516 ~ 13366130 (+) True AMCG00015588
AMCG00015609 mRNA downstream 85659 13802481 ~ 13821972 (+) True AMCG00015609
AMCG00015610 mRNA downstream 115773 13832595 ~ 13834746 (+) True AMCG00015610
AMCG00015608 mRNA downstream 165788 13882610 ~ 13884666 (+) False AMCG00015608
AMCG00015616 mRNA downstream 268721 13985543 ~ 13993089 (+) True AMCG00015616
AMCG00015617 mRNA downstream 373145 14089967 ~ 14096267 (+) True AMCG00015617
TU123399 other upstream 75798 13583970 ~ 13613292 (+) False AMCG00015602
TU123395 other upstream 95720 13576196 ~ 13593370 (+) True AMCG00015602
TU123364 other upstream 241811 13445525 ~ 13447279 (+) True G98884
TU123358 other upstream 251943 13433051 ~ 13437147 (+) True AMCG00015591
TU123359 other upstream 253388 13433051 ~ 13435702 (+) False AMCG00015591
TU123659 other downstream 380123 14096945 ~ 14100855 (+) True G99074
TU124082 other downstream 1332101 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 1597214 15314036 ~ 15314414 (+) True G99475
TU124310 other downstream 2080128 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 2414222 16131044 ~ 16131387 (+) True G99624

Expression Profile