RNA id: TU123466



Basic Information


Item Value
RNA id TU123466
length 862
lncRNA type sense_over
GC content 0.53
exon number 6
gene id AMCG00015608
representative False

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13881425 ~ 13884671 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tctgttaattctaaatgcatttgactattttgttggtttggcagtttgccctttaaacacagtttgttttgaatgagTTGTTGCACACTTATATTGAGTTATTTGGcatttgggtttttgttttaagNNNNNAGTGTGAATATGGTTTGGCCCAGTCGGCCCCCATGTTAAAGTCCTATTGGACTGTCCCGATCAGTGCTGAAGCGCGCGGTGGAGACGCTCAGAAATGGCGACTCGCTCTAAACCAGcCGCTAGGGGGCAGAAGCGCAGGGCAGCCCCGGAGCCGCAGGGGGCTTTTTCCCAGGCAGAGGACACTGCCAGCAAGCAGCCCAAGAAAGAGAGGGGcaggagggacgggcaggaggGGGCAGCAGAGGGCCGGAGAATCACCATCGAGCACTGtGTGAGCTGACGCGTGTttgggaggcaggcagaggcgTTGCGTGGGGCCATCCTGGAGCAGCACCCTGACCTGCCTGTGCTCTGCAACCCGGAGAAACCCCGAAGGGGCAGCTTCGAcatcacactgacactgacccCGGGCCAGCagGTAAGTCTGTGGTCCGGTGTTAAGAAGGGTCCTCCTCGTAAACTGAAGTTCCCTGACCCTACAGTGGTGCTGTCTGCCCTGAAGGAAGCGCTGGAGAGCCAGTGAGACACAGCCCATCCTCTTCCAGAATTCCCTGTTCCAGGTGCATTATGACAAGGACTGACCAGCGGGGACCTCCAGTCATTCCTTTGATGTCCTCCCTGCCCTGGTATGAGAGACTGGTTGAGTGGCGAGAGAATTACACCGCATTCCTTTTTGCAAAACTGTTATGCTGtattttatgttgaaataaagttatttttctgaacttgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU123431 lncRNA upstream 70486 13791042 ~ 13810939 (+) True G98918
TU123406 lncRNA upstream 283710 13579724 ~ 13597715 (+) True G98901
TU123377 lncRNA upstream 364996 13493782 ~ 13516429 (+) True G98889
TU123361 lncRNA upstream 421639 13458129 ~ 13459786 (+) True G98881
TU123368 lncRNA upstream 427299 13453887 ~ 13454126 (+) True G98888
TU123637 lncRNA downstream 32924 13917595 ~ 13918028 (+) True G99053
TU123640 lncRNA downstream 40577 13925248 ~ 13933503 (+) True G99056
TU123653 lncRNA downstream 166824 14051495 ~ 14065138 (+) True G99068
TU123655 lncRNA downstream 179258 14063929 ~ 14109320 (+) True G99070
TU123660 lncRNA downstream 212274 14096945 ~ 14097938 (+) False G99074
AMCG00015610 mRNA upstream 46679 13832595 ~ 13834746 (+) True AMCG00015610
AMCG00015609 mRNA upstream 59453 13802481 ~ 13821972 (+) True AMCG00015609
AMCG00015607 mRNA upstream 164603 13689090 ~ 13716822 (+) True AMCG00015607
AMCG00015600 mRNA upstream 274170 13598286 ~ 13607255 (+) True AMCG00015600
AMCG00015602 mRNA upstream 289289 13583116 ~ 13592136 (+) False AMCG00015602
AMCG00015616 mRNA downstream 100872 13985543 ~ 13993089 (+) True AMCG00015616
AMCG00015617 mRNA downstream 205296 14089967 ~ 14096267 (+) True AMCG00015617
AMCG00015618 mRNA downstream 219657 14104328 ~ 14112925 (+) True AMCG00015618
AMCG00015619 mRNA downstream 256451 14141122 ~ 14146970 (+) True AMCG00015619
AMCG00015625 mRNA downstream 336925 14221596 ~ 14234664 (+) True AMCG00015625
TU123399 other upstream 268133 13583970 ~ 13613292 (+) False AMCG00015602
TU123395 other upstream 288055 13576196 ~ 13593370 (+) True AMCG00015602
TU123364 other upstream 434146 13445525 ~ 13447279 (+) True G98884
TU123358 other upstream 444278 13433051 ~ 13437147 (+) True AMCG00015591
TU123659 other downstream 212274 14096945 ~ 14100855 (+) True G99074
TU124082 other downstream 1164252 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 1429365 15314036 ~ 15314414 (+) True G99475
TU124310 other downstream 1912279 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 2246373 16131044 ~ 16131387 (+) True G99624

Expression Profile