RNA id: AMCG00015609


Basic Information

Item Value
RNA id AMCG00015609
length 2014
RNA type mRNA
GC content 0.55
exon number 14
gene id AMCG00015609
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13802481 ~ 13821972 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGCaacgagagagagaaggggggggagAGGAAAAGTTGCTAGTACTATTACATACCAACCATGCACACCATACAAACTGGATTAGCCTGTATAGTAGGGTCTtagtacaattaataataagaaaagtaGTCCTGCTGTTTCGGGGAGTACAAgcgtgttggtgtgtgtgtgtgagtgaggggggagagagggagagagagagagagagggagggagagagagagagagaggaagtgggCAGAGAGTgagctttttaatttgtataaagaGAAAAGTAACACGTCCTACAACAGGAACAACACATCGTAACGTGTCATCGGCGTCAAAGACAGACTGTCCTGTTTCCCGCGCAATATGGCTCCCTCTCTGTCACAGGCATACCGCAGGCGGTGGTGGATGGCCGGCTCTGCGGTGGTGGAGAATCTGCTGTTCTCGGCTGTTCTGCTGGGCTGGGGCTCGCTGCTCATCATGCTCAAGCACGAGGGCTTCTACTCTCACCTGTGCAAAGTGTCCAATTCCTCCACAGTGTTCAGTAACTCAACCTTGAAGCCCAGCTGTGTTGAGCAGGAGGAGATGCTGAACCTGGGCTTCACCATTGGCTCCTTCTTGCTGAGCGCCGCCACCCTGCCCCTGGGCATTCTGATGGACAAATATGGGCCCCGCCCACTGAGACTGCTGGGCAGctcatgttttgctttatccTGTGTAATTATGGCTGCCTCTGCCTACGACCCAGGGgttTTGTCCGCACTCATCTTCATCGCTCTGTCCTTCAATGGCTTTGGAGGAATCTGCCTGACGTTCACCTCACTCacgttgcCCAACATGTTTGGTACTCTGTGTTCCACAGTGATGTCTCTGATGATCGGCTCTTACGCCTCCTCAGCAATTACCTTCTTAGGAATcaagctggTGTATGACGCTGGGGTGTCGTTCACAGTGATCATGTGGGTGTGGGCAGGGCTGGCCGGCTTGGTTTTTGTCAACTGCTTCCTCAACTGGCCACTGGAGTCCTTCCCATCTCCCGAGGAGATCAACTACACTAAGAAGATCAAGCTCAGTGGTCTGGCTCTGGATCACAAGGTGACGGGCGACCGCTTCTACAGCCACGTCAGCAGTGTGGGCCAAAGGCTGAGCCAGAAGCACAGAGACACGCAGTCCTCCTCCCAGGAGATCAGCACTGGTGCTCCAGCacagaGCTCAGTGCCCTTCCGACGCTCTGTCTGCTCGCCGATCTTCCTGTGGAGTCTGCTCACCATGGCAATGACCCAGCTGCGCATCATCTTCTACATGGGGGCGTTGAACAAGATGCTGGAGTTCATAGTGATTGAGGGAAAGAACATGCTTTCAGTGGATATATCGCAGAAACCAGAGGAGGAAGTGGACTTCTACTCGTCGATCTTCGCCACATTGCAGCTGCTGTGTCTGGTCACCTGCCCTCTGATTGGTTACATGATGGACTGGAGGATGAAGGAGTGCGAGGAGCAGAAGAGcccagagacagagggagagaagagcaccccccagcccccccgcAGGGATGGTAAGATCCAAAAGCTGACCAACTGCATTAGAGCCTTCATCATCACCAACCTGCTTCTTGTGCTGTTTGGGATCACCTGCCTCATCAACAACCTACCTGTACAGgtCGTGTCGTTCATCCTCCACACTGTGGTGAGAGGCTTCATCCACTCATGCTGCGGAGGCCTGTACGCTGCCGTGTACCCCACCAATCACTTCGGCACCCTGATCGGGCTGCAGTCGCTCATCAGCGCCCTGTTCGCCCTGCTGCAGCAGCCGCTGTTCATGGTCATGGTGGGGAACCTGCACGGCGACCCCTACTGGGTGAGAGAGAAGAGAACGGAGGGAGAAAGTGGGGAAGGAgatggagaagggaagggagcgggggagggggagggagagggagatggggaggaagcagagggtgagagagagaggaaggaaggaagggggaggagagagggaagacaGAGTGGTAGGAAAGAAGGGTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08228 SLC43A1; MFS transporter, LAT3 family, solute carrier family 43, member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123406 lncRNA upstream 204766 13579724 ~ 13597715 (+) True G98901
TU123377 lncRNA upstream 286052 13493782 ~ 13516429 (+) True G98889
TU123361 lncRNA upstream 342695 13458129 ~ 13459786 (+) True G98881
TU123368 lncRNA upstream 348355 13453887 ~ 13454126 (+) True G98888
TU123353 lncRNA upstream 411062 13387076 ~ 13391419 (+) True G98876
TU123465 lncRNA downstream 59453 13881425 ~ 13884671 (+) True AMCG00015608
TU123466 lncRNA downstream 59453 13881425 ~ 13884671 (+) False AMCG00015608
TU123637 lncRNA downstream 95623 13917595 ~ 13918028 (+) True G99053
TU123640 lncRNA downstream 103276 13925248 ~ 13933503 (+) True G99056
TU123653 lncRNA downstream 229523 14051495 ~ 14065138 (+) True G99068
AMCG00015607 mRNA upstream 85659 13689090 ~ 13716822 (+) True AMCG00015607
AMCG00015600 mRNA upstream 195226 13598286 ~ 13607255 (+) True AMCG00015600
AMCG00015602 mRNA upstream 210345 13583116 ~ 13592136 (+) False AMCG00015602
AMCG00015597 mRNA upstream 285897 13501643 ~ 13516584 (+) True AMCG00015597
AMCG00015591 mRNA upstream 366354 13433454 ~ 13436127 (+) False AMCG00015591
AMCG00015610 mRNA downstream 10623 13832595 ~ 13834746 (+) True AMCG00015610
AMCG00015608 mRNA downstream 60638 13882610 ~ 13884666 (+) False AMCG00015608
AMCG00015616 mRNA downstream 163571 13985543 ~ 13993089 (+) True AMCG00015616
AMCG00015617 mRNA downstream 267995 14089967 ~ 14096267 (+) True AMCG00015617
AMCG00015618 mRNA downstream 282356 14104328 ~ 14112925 (+) True AMCG00015618
TU123399 other upstream 189189 13583970 ~ 13613292 (+) False AMCG00015602
TU123395 other upstream 209111 13576196 ~ 13593370 (+) True AMCG00015602
TU123364 other upstream 355202 13445525 ~ 13447279 (+) True G98884
TU123358 other upstream 365334 13433051 ~ 13437147 (+) True AMCG00015591
TU123659 other downstream 274973 14096945 ~ 14100855 (+) True G99074
TU124082 other downstream 1226951 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 1492064 15314036 ~ 15314414 (+) True G99475
TU124310 other downstream 1974978 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 2309072 16131044 ~ 16131387 (+) True G99624

Expression Profile