RNA id: AMCG00015616


Basic Information

Item Value
RNA id AMCG00015616
length 630
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00015616
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13985543 ~ 13993089 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATAAGGTACACCACGTTAAAGGCATTGTGGGAGGGGCTGTCCCTTTCAAGGCCCCACTTTCGGTGGGTTTCCTGATGTACGGAGAGCAGGGCAACTTCGCCAAGATAAAAGAGTTGAACCCGCAAGACAGTGGGGTTTACAAAgtgcagagcacagagcagcaaGGATCCATGAAGACATTTCACCTGATCATCACTGAGTTAATAGTCAatgtacagtgtgcagtgtgggaCACACACCTTcacctcctctctccctcactctccacAGATAACGTCTCGGAACCTCAAGTGAACGTCCCTCTCAGGAGTGTCAACCAGACTGTCAGGCATTGCTCTGCCCTGTGCTCTATGGCCAATGGGAGAGAGGTGCCCCTGTCCTGGTACAGAGAGGGTCAGACTCTGAACCACACCAGCTCTCCCAGTCTTGACACACTGGAGATCAGACTAGAGCTGCCGGAAAGCCTACTGGTCCTGGGCATCACAGTCGCACCATCACAGTCAACCCTCTGCACTATTGCACAGAGAGAGCTGCAGCATGGACCACAGTTAACAGCTAGCCATGGAGAGGTCAACATGCCTGagagggagaaaaatggCAATATCGCCAAACAGCCACGCTACATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123640 lncRNA upstream 52040 13925248 ~ 13933503 (+) True G99056
TU123637 lncRNA upstream 67515 13917595 ~ 13918028 (+) True G99053
TU123465 lncRNA upstream 100872 13881425 ~ 13884671 (+) True AMCG00015608
TU123466 lncRNA upstream 100872 13881425 ~ 13884671 (+) False AMCG00015608
TU123431 lncRNA upstream 174604 13791042 ~ 13810939 (+) True G98918
TU123653 lncRNA downstream 58406 14051495 ~ 14065138 (+) True G99068
TU123655 lncRNA downstream 70840 14063929 ~ 14109320 (+) True G99070
TU123660 lncRNA downstream 103856 14096945 ~ 14097938 (+) False G99074
TU123661 lncRNA downstream 103856 14096945 ~ 14099137 (+) False G99074
TU123691 lncRNA downstream 133532 14126621 ~ 14136675 (+) False G99093
AMCG00015608 mRNA upstream 100877 13882610 ~ 13884666 (+) False AMCG00015608
AMCG00015610 mRNA upstream 150797 13832595 ~ 13834746 (+) True AMCG00015610
AMCG00015609 mRNA upstream 163571 13802481 ~ 13821972 (+) True AMCG00015609
AMCG00015607 mRNA upstream 268721 13689090 ~ 13716822 (+) True AMCG00015607
AMCG00015600 mRNA upstream 378288 13598286 ~ 13607255 (+) True AMCG00015600
AMCG00015617 mRNA downstream 96878 14089967 ~ 14096267 (+) True AMCG00015617
AMCG00015618 mRNA downstream 111239 14104328 ~ 14112925 (+) True AMCG00015618
AMCG00015619 mRNA downstream 148033 14141122 ~ 14146970 (+) True AMCG00015619
AMCG00015625 mRNA downstream 228507 14221596 ~ 14234664 (+) True AMCG00015625
AMCG00015629 mRNA downstream 460428 14453517 ~ 14456893 (+) True AMCG00015629
TU123399 other upstream 372251 13583970 ~ 13613292 (+) False AMCG00015602
TU123395 other upstream 392173 13576196 ~ 13593370 (+) True AMCG00015602
TU123364 other upstream 538264 13445525 ~ 13447279 (+) True G98884
TU123358 other upstream 548396 13433051 ~ 13437147 (+) True AMCG00015591
TU123659 other downstream 103856 14096945 ~ 14100855 (+) True G99074
TU124082 other downstream 1055834 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 1320947 15314036 ~ 15314414 (+) True G99475
TU124310 other downstream 1803861 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 2137955 16131044 ~ 16131387 (+) True G99624