RNA id: AMCG00015618


Basic Information

Item Value
RNA id AMCG00015618
length 2708
RNA type mRNA
GC content 0.59
exon number 21
gene id AMCG00015618
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14104328 ~ 14112925 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTTGACCCGTTTCCGGCGAGCGCAGacagactgagacagagagagagagacggagacggGGGATAGAGAAAGAGACCAGACACCATAAATACAGCAGCACAAGAGTAAGCAATACGGCCCCGATCCCGACATAATATCTGGTAGACCTTTCAAATTCTGTCTGGGACCAAAGATGTCAGGGTTAAAGCGCCCTGGTGATCCCTCGACCTCCGCCCCCCCTGAGAAGcggagggagcgagagagggaggaggcagaggaggggGGAGCTGGGGGTGGCAGTACAGCAGTGGAGACGGTCATCAAACTGGGTGGAGTGTCTAACACTGAGGAGCAGGATATCCGTGCCCTGCAGGTGAAGAACAGGAAGCTGGGCGAGTCTCTAGACCAGCGGCAGtttGATGAGAATTTGCGTCTGGTTGGCCGACGGTATGACATTGATGCGGACGTTGGTGACCACCTGACAACCCCTGAGGGGCGAAGTCTAAAGCCAGAGACACCGGAGCCAGATGGCGACAGCAACCAGGAGCGAGGGAGAGACTGCCGGAGCCAAGGGGAGGCAGTGCAGTCATTCTTGGCCACACTGGCCAGCAGCAGCACGGAGGAGATGGAGGCGGAGCTGCAGGAGAGGGTGGAGTCCAGCAGGGCGCTGGCCAATCGTGTGGCAGAGATCTATGACCGGCTGAAGGGCACTGTGGACCGACTGGAGAAAGAGCTGGGGCCAGAGAGCACTATGTGGCAAGCAGTGTCCCAGCTCAACACTCTGCTGTCCAGGGAAAATGAGAGACTCCAGCAGCTCACTGACCAACTGCAGCTCCGGCACCAGAGCATGACCTCAGAATCGCAGTCGCTGGCACGGGCGGGGCAGTGTGCGGAGGGCCGTGTGGGGGAGCTGCAGGGCCGCATCGAGGAGCTGCAGTGGGACATGGAGAAGATCCGCCGTCGAGAGAACCGTCTTAACGCACACCTGGGGGAGGTGctggagagggtgaaCAGCAAGGGCTACAAGGTGTGCGGGGAGGCCAGCAGTGTGTGTGGGACCATAACCATCAACAAGAGGAAGTTTGAGGAGATGAACAGTGAGCTGGAAGAGAACAGAGAGCTGGCGGAGAACAGGCTGAGTGAGCTGCAGAGACTGACCCAGGACCTGCAGCAGATCAGTCAGGAGAACAACACCATGAGGgtggagCTGTGCTGCCGTGCTGAGGGGGTTGTGAGGGACTCTGCAGAGTACCGCTGTCTGCAGTCCCAGTTCTCTaATGACGAGGTGGGGCTGCAGAGGAAGGTGCGCACAGAAGTGATCCAGCTGGAGGACACACTGGCGCAGGTGAGGAAGGAGTACGAGATGCTGCGCATCGAGTTCGAGCAGACGCTGGCGGCCAACGAGCAAGCGGGACCCATCAACCGGGAGATGAGGCATCTGATCAGCACCCTGCAGAACCACAACCAGCAGATGAAGGGAGAGGTGCAGAAGTACAAACTGAGGCTGAGGGAGGCCCAGAGTGAGCTGAGCaagGCCCGTGCCGTGAAGGGCAGCTCCCTCCTCCAGTCGCAGTCCAGCACAGAGCTGGATGTGAAGGAGGAGACAGCCTCCCCCCTCACCCCTTCCACCTCCAGTGACATTACCatcaagacagagtcagagccAGGCCCAGCCACACCCACCACCACAGgattcTCGGTGAAGGTGGAGCCAGGCACAGAGAGCGAGGGAAGCATaaaagaggaggagagggagaaggccCGGGGAGGGGGTGCAGCTGtgaaggaggagagggagaggactgGCTCCAGCAGCCAACCAGACGATCTGGGCCCTGAGCGCTTGGCTGTGATTGGAGGAGCCAAGAGGAAGGAGGAACAGAGGGACAAGGTTCAGCTTATGGCTGCTGAGCGCAAGGCCAAGAGTGAGGCAGAGGATCTGAGGCAGCGCCTGcgggagctggaggagagggagaggagggaggggaagaaGATGGCTGACGAGGAGGCGCTGAGGAAGATCCGTTCAGTTGAGGACCAGATCGACACTCTGAACAAGAAGCTGTCCCTTGCCAAGCAGgaagAGGAGGCCCTACTCAGTGAGATGGATGTGACCGGTCAAGCCTTCGAAGACATGCAGGAGCAGAACATCCGGCTGATGCAGCAGCTGAGGGAGAAGGACGACGCCAACTTCAAGCTCATGAGCGAGAGGATCAAGAGCAACCAGATCCACAAGCTgctgaaggaggagaaggaggagctgGCCGACCAGCTGCTCACGCTCAAGACACAGgtggatGCTCAGCTGCAGGTGGCACTGGAGTCGCTGCAGCAGTCTGAGGAGCTGCGTGTCCAGATGGACAGTGTCCAGGTCCGGCTCAACGCCGTCAGGGAGGAGGTCATCGAGAACAGCATCTCCCGCGAGAAGGAGTCCTTCAATGCCCGCCGAGCACAGgaggaTATCTCTAAGCTGCGCAGGAAGCTGGAGAACGCCAAGAAGCCAGAGGACATCCCCAACTGTGACGAGATCCTTAATGAGGAGATTAATGACTATAAGgcACGGCTGACCTGCCCGTGCTGTAACTCGCGGGTGAAGGACGCTGTGCTGACCAAGTGCTTCCACGTGTTCTGCTTCGAGTGCGTGAAGACCCGCTACGACACGCGCCAGAGGAAGTGCCCCAAGTGCAACGCTGCCTTCGGGGCCAATGACTTCCACAGGATATACATA

Function

GO: NA

KEGG:

id description
K10696 BRE1; E3 ubiquitin-protein ligase BRE1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123661 lncRNA upstream 5191 14096945 ~ 14099137 (+) False G99074
TU123660 lncRNA upstream 6390 14096945 ~ 14097938 (+) False G99074
TU123653 lncRNA upstream 39190 14051495 ~ 14065138 (+) True G99068
TU123640 lncRNA upstream 170825 13925248 ~ 13933503 (+) True G99056
TU123637 lncRNA upstream 186300 13917595 ~ 13918028 (+) True G99053
TU123691 lncRNA downstream 13696 14126621 ~ 14136675 (+) False G99093
TU123692 lncRNA downstream 13696 14126621 ~ 14152625 (+) True G99093
TU123727 lncRNA downstream 158456 14271381 ~ 14425466 (+) True G99120
TU123732 lncRNA downstream 203475 14316400 ~ 14324233 (+) True G99125
TU123743 lncRNA downstream 273208 14386133 ~ 14387285 (+) True G99136
AMCG00015617 mRNA upstream 8061 14089967 ~ 14096267 (+) True AMCG00015617
AMCG00015616 mRNA upstream 111239 13985543 ~ 13993089 (+) True AMCG00015616
AMCG00015608 mRNA upstream 219662 13882610 ~ 13884666 (+) False AMCG00015608
AMCG00015610 mRNA upstream 269582 13832595 ~ 13834746 (+) True AMCG00015610
AMCG00015609 mRNA upstream 282356 13802481 ~ 13821972 (+) True AMCG00015609
AMCG00015619 mRNA downstream 28197 14141122 ~ 14146970 (+) True AMCG00015619
AMCG00015625 mRNA downstream 108671 14221596 ~ 14234664 (+) True AMCG00015625
AMCG00015629 mRNA downstream 340592 14453517 ~ 14456893 (+) True AMCG00015629
AMCG00015630 mRNA downstream 349735 14462660 ~ 14467684 (+) True AMCG00015630
AMCG00015636 mRNA downstream 388829 14501754 ~ 14502659 (+) True AMCG00015636
TU123659 other upstream 3473 14096945 ~ 14100855 (+) True G99074
TU123399 other upstream 491036 13583970 ~ 13613292 (+) False AMCG00015602
TU123395 other upstream 510958 13576196 ~ 13593370 (+) True AMCG00015602
TU123364 other upstream 657049 13445525 ~ 13447279 (+) True G98884
TU123358 other upstream 667181 13433051 ~ 13437147 (+) True AMCG00015591
TU124082 other downstream 935998 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 1201111 15314036 ~ 15314414 (+) True G99475
TU124310 other downstream 1684025 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 2018119 16131044 ~ 16131387 (+) True G99624
TU124723 other downstream 2985534 17098459 ~ 17131749 (+) False AMCG00015703

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000110_03095980_03103572.mRNA True 2135 mRNA 0.49 12 CI01000110 3095456 ~ 3103572 (-)