RNA id: AMCG00015620


Basic Information

Item Value
RNA id AMCG00015620
length 1206
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00015620
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14113994 ~ 14118650 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCACTTCCCTCTGCCTCGATCTCCCGCTCTGTTGCCACTCCCTGTTTCGCTCTCCCACTTACCCTCTCTGTGTGATATAAACTGGTTTTATAATCAACTACACAAGCTGAGATACAAGACCATGGATCCATCAGCAGTGGAAGAGCAGACCTCTGAGCCAGCTGGGGATGAGAGGCAGTCAGTAATGCTCAAGTCAAGCAAGCCACTACAGCGCTTCACCAGCAAGGAACCCAAGAGTgtggggATAGTGTTGCTGTTCCTGGGCTGTGGTCAGTTCATGATGGGAATCCCACTTAGGCGAGATGGACACCTGATCTACAATGAGTCTCTCACCGCCTTCTGGATGGGAGCTCTGTTCATTACATCAGGTCTTCTGTGCATCTTCAGTGAAAAGAAGCCCTCGAAAAAATTGgtgacagtgtgtcagtgcctgTGCACAGTGTCAGCGCTGGCCTGCCTGATCTGCCTGGTTAGGCACTCCTTCTCCATGAACGAGGTAAACCACTTCTTCACCATAACCTTCAACAAGATGGACAGCTGGTTGAAGCACTGGATGgaGACCATTTTTTATATAGAGTTAGTGCTCTTTCTGCACTCAGCAGTGGGGGGTGTCCTGGTGACAGTGATGGCAGTGTTCTCTGTCAAGGCTCTGCGCTCCACCAAGACACAGGCCATTGTGGTAATACAGAAACCGAAGACAGAAGTTCCTGTGTAAAATCGATCCAATCTCTATCCTCGCAGTGTGAATTGTGACATCATATGGCCACTAGCCAATCAGCAACATCAATGTATGTAACTACAACTGTATAACCGACCCACTCATTTTGAGTGAGAATTCATGTGGCCAAAATGCATtatacaaaattgtattataattatattatgatATCTAACAAGACATCTGGGGACTGAGCTCAGAAGAGTAGTACAGAAACCAAAACCCACAACCCTGACAGAGCTGGAGAAGGTGTCAGGTGGAATGGTGAAAACCCCTCCTGAAAAGAGACAGAGCCTTCTTGACAACCGCAAGCATCTCCTCAGGAACGGGAGAGGCAGAACATATGGTCAGCCGGGGGGTGAGGAGATGTTTTTTCgaatacacaaaaatatttttaaaacatgtttctctgtgctgcattattattagtaaaaaattgaaaatacattttagttgaataaataaaacatttcctttgttAATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123789 lncRNA downstream 7549 14105454 ~ 14106445 (-) True G99167
TU123784 lncRNA downstream 22179 14090037 ~ 14091815 (-) True G99165
TU123648 lncRNA downstream 75691 14034258 ~ 14038303 (-) True G99063
TU123642 lncRNA downstream 182872 13925248 ~ 13931122 (-) True G99058
TU123639 lncRNA downstream 195670 13918075 ~ 13918324 (-) True G99055
TU123834 lncRNA upstream 176318 14294968 ~ 14320716 (-) False AMCG00015628
TU123832 lncRNA upstream 200817 14319467 ~ 14320716 (-) True AMCG00015628
TU123859 lncRNA upstream 339815 14458465 ~ 14464160 (-) True G99217
TU123968 lncRNA upstream 384114 14502764 ~ 14503911 (-) False AMCG00015640
TU123979 lncRNA upstream 420021 14538671 ~ 14603977 (-) True G99296
AMCG00015623 mRNA downstream 12242 14097425 ~ 14101752 (-) True AMCG00015623
AMCG00015615 mRNA downstream 29972 14079494 ~ 14084022 (-) True AMCG00015615
AMCG00015614 mRNA downstream 37852 14057339 ~ 14076142 (-) True AMCG00015614
AMCG00015611 mRNA downstream 244004 13865851 ~ 13869990 (-) True AMCG00015611
AMCG00015612 mRNA downstream 263211 13837951 ~ 13850783 (-) False AMCG00015612
AMCG00015621 mRNA upstream 3816 14122466 ~ 14128364 (-) True AMCG00015621
AMCG00015624 mRNA upstream 28872 14147522 ~ 14154144 (-) True AMCG00015624
AMCG00015622 mRNA upstream 47048 14165698 ~ 14172599 (-) True AMCG00015622
AMCG00015627 mRNA upstream 138175 14256825 ~ 14273368 (-) True AMCG00015627
AMCG00015628 mRNA upstream 213217 14331867 ~ 14336329 (-) False AMCG00015628
TU123617 other downstream 249256 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other downstream 249256 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other downstream 249256 13841229 ~ 13864738 (-) False AMCG00015612
TU123543 other downstream 374875 13671315 ~ 13739119 (-) True AMCG00015606
TU123499 other downstream 654205 13458127 ~ 13459789 (-) False AMCG00015598
TU123831 other upstream 207517 14326167 ~ 14334932 (-) False AMCG00015628
TU123851 other upstream 329061 14447711 ~ 14456695 (-) True G99213
TU123958 other upstream 362544 14481194 ~ 14482908 (-) True G99286
TU123992 other upstream 452001 14570651 ~ 14573089 (-) True AMCG00015642
TU123993 other upstream 455716 14574366 ~ 14577633 (-) False AMCG00015642

Expression Profile