RNA id: AMCG00015623


Basic Information

Item Value
RNA id AMCG00015623
length 738
RNA type mRNA
GC content 0.61
exon number 7
gene id AMCG00015623
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14097425 ~ 14101752 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATACACTGGGACAGGCAGggacgATGGGGAAGAGGCTGCAGAAGATCAACGTTGAAAACACAGAGGAGCATCGGCGGCAGTTCCGCCAGCTGctgctgacctctgaccctgcGCTGTCCAACTCCATCGGTGGGGTCATCCTATTCCACGAGACGCTGTACCAGAAGAGCGACACGGGGGTGCTGTTCCCAAAAATCATCAAGGACGCTGGCATCGTAGTGGGCATCAAGGTGGACAAAGGGACAGCAGCTCTGGCTGGAACAGATGGGGAGACGACGACACAGGAGAATGCCAATGTGCTGGCAAGATACGCCAGCATCTGTCAGCAGCCCAACATGGTGACAGCCGGCCAAGCCTGCTCCCAGAAGTACACCCCCCAGGAGGTCGCCATGGCAACAGTCACTGCCCTGCGCCGTACTGTGCCAGCTGCTGTGCCCGGTATCTGTTTCCTGTCGGGGGGGCAGAGTGAGGAGGAGGCGTCGCTGAACCTGAACGCCATCAACCAGTGCCCCCTACCTCGGCCTTGGAAGCTCACCTTCTCCTATGGCCGCGCCCTGCAGGCCTCCACCCTTGCCACCTGGCAGGGCAAGCCAGGAAACACCAAGGCTGCTCAGACCACCTTCTCCACCCGGGCCAAGATCAACGGCCTGGCGTCCAAGGGGGAGTACAAGCCCAGTGGCCAGACGGACCAGTCCGCCACCCAGTCTCTCTTCAGCGCCAGCTACGTCTACTAG

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG:

id description
ko04950 Maturity onset diabetes of the young

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123784 lncRNA downstream 5610 14090037 ~ 14091815 (-) True G99165
TU123648 lncRNA downstream 59122 14034258 ~ 14038303 (-) True G99063
TU123642 lncRNA downstream 166303 13925248 ~ 13931122 (-) True G99058
TU123639 lncRNA downstream 179101 13918075 ~ 13918324 (-) True G99055
TU123635 lncRNA downstream 195111 13901356 ~ 13902314 (-) True G99051
TU123789 lncRNA upstream 3702 14105454 ~ 14106445 (-) True G99167
TU123834 lncRNA upstream 193216 14294968 ~ 14320716 (-) False AMCG00015628
TU123832 lncRNA upstream 217715 14319467 ~ 14320716 (-) True AMCG00015628
TU123859 lncRNA upstream 356713 14458465 ~ 14464160 (-) True G99217
TU123968 lncRNA upstream 401012 14502764 ~ 14503911 (-) False AMCG00015640
AMCG00015615 mRNA downstream 13403 14079494 ~ 14084022 (-) True AMCG00015615
AMCG00015614 mRNA downstream 21283 14057339 ~ 14076142 (-) True AMCG00015614
AMCG00015611 mRNA downstream 227435 13865851 ~ 13869990 (-) True AMCG00015611
AMCG00015612 mRNA downstream 246642 13837951 ~ 13850783 (-) False AMCG00015612
AMCG00015613 mRNA downstream 267703 13826977 ~ 13829722 (-) True AMCG00015613
AMCG00015620 mRNA upstream 12242 14113994 ~ 14118650 (-) True AMCG00015620
AMCG00015621 mRNA upstream 20714 14122466 ~ 14128364 (-) True AMCG00015621
AMCG00015624 mRNA upstream 45770 14147522 ~ 14154144 (-) True AMCG00015624
AMCG00015622 mRNA upstream 63946 14165698 ~ 14172599 (-) True AMCG00015622
AMCG00015627 mRNA upstream 155073 14256825 ~ 14273368 (-) True AMCG00015627
TU123617 other downstream 232687 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other downstream 232687 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other downstream 232687 13841229 ~ 13864738 (-) False AMCG00015612
TU123543 other downstream 358306 13671315 ~ 13739119 (-) True AMCG00015606
TU123499 other downstream 637636 13458127 ~ 13459789 (-) False AMCG00015598
TU123831 other upstream 224415 14326167 ~ 14334932 (-) False AMCG00015628
TU123851 other upstream 345959 14447711 ~ 14456695 (-) True G99213
TU123958 other upstream 379442 14481194 ~ 14482908 (-) True G99286
TU123992 other upstream 468899 14570651 ~ 14573089 (-) True AMCG00015642
TU123993 other upstream 472614 14574366 ~ 14577633 (-) False AMCG00015642

Expression Profile