RNA id: AMCG00015625


Basic Information

Item Value
RNA id AMCG00015625
length 1848
RNA type mRNA
GC content 0.60
exon number 10
gene id AMCG00015625
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14221596 ~ 14234664 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCTGCTcacctcccccctctctctctgccagccCAGCTGTCAGTGTCAGGGTCCTGGGCAGCCCTGCCCCTCTCCCAGGCCCAGCAGGATCTCTTTGCCAACTCCAGCCTCCTGGCCCACTCACTGCCCCTGCTCCTGCTGCCCCGGCCTGGGGCGCCAGGCTTACCTGCAACAAACGCTCCGTCACACGCACAGACGTGCACACAGGCATGCAGGCAAACACACAGCATGGCTGCGCAAGAACAGTCCCGGAAAAAGTCCCGGCACATTGGGTGCTCAGGTCCAGCTGTATTACTCCACCTCGGGCTCCCCTGCTGTGTCCCCTACCTGCCAGGAGGACAAACTGCAGGAATCTCAGAATAGACTATATTACATTGGAGCGGTTAATctgggagaggcagggagagagggacagagaaaagATAATTTAGTAGGCATGCATACCCCCTccgcttcctcctcctcttccttctgtTCTGGCACTCAGAGAGATGCCCGTCACCGCACACAGGAAGGGGAGGAGCTCTGGCTGGATCCCAATGTGCTGATTGGCTACTGCAAGGGTCCAGTCAAGGCCGGACAGCCAATCGTGGTGTCCGTGCTACTCAGATCCAACTTCAGTGCTGATGTGGTGGTGATCAGGCTGAAAGTGAAGAAGGGCACGCTGACCATCTTGGCTGACTCCGCTGTGACCTCTGGCCCCTGGGCTGTTGGCGTGGAGAGGTCAGTGGGGGCGAAGCACGAGACAATGTCACTGATTTGTCACCGAATCAACAGCCTCTCCCAGACTGACAGGGTGCTGTGGGGGGTGGAGTATTCAGGACGCAATAACCCACTGCCTCCACTAGGGGGCATTGTGTCCACATTCACCTTCACTCACACTGACATAGTGGGCATTGCACCCATCCCTGAGACCACCTCCCTGATCAACACTGCTGTGCTCACCGGCCAGCCCGTGTCTCTTCCTGTCACTGTGCTGGCAGTGGAGCATGATGGGAAGGTTTCAGATGTCACCAGTGCTGCAATCTGCCGCTCCACTAACAAGAACATCATTAAGGTGTCGAGTGACTGCTCCGCCCTGTTTGTGGATGGCAGCGAATCCGGGCCGGGGGGTGTGTGCGTGGAGGTGGAGTTCTCTCTGGGGGCGCTCTCTGGCTCCCTCTGCCTGACAGTGTGGGCGCCGCAGCTgcccctgtctCGTTCCTCAGTGCAGGTCCTGGCCCAGTTCACAGCCCTTGCCCCTCTGCGTGGCCGCAGTCGGCTGATCTACATGCTGGGCTCTCCTGACTGGTCGGTGGACGTGACGGCGCTGGTCCGCGATTGGCTGAGAGTGGAGGACCCCCGCGTGGTGTCCACTCAATGGGACAGTGTGCTGGGGGCAGTTGAGGTCACTGTTTCACCTGACCCTGTGACCCTGGATGACCTCTGGGTGCAGCTGGTGACTGGACTGAGCCTGTCAATCACCGCCAGTCCCTCCCACCCCGCGGTTGTCACGGCAACACCCCGCCCACTTCCCAAGGCAGTTGCCCGGGGTGACGGGGGCGGGCCTCTGCTCAGAGCAGAGTTGGTGTCCGTCCCCTGCCGCAGCTCCCAGCCAATGGGGAGTGAGGGGGACGTTGCCCTGGCGGGGGGCTCTGGCTGGGTGCGGGTGAAGTTGCAGCCTGCCTCCCGGGCAGTGGGAAGCGAGGAGGCGGAGTCTGAACTGCTGGAGATCTCCGAGTTTCTCTTGGAGTCAGATTCTGAGAACAGTTTCCAAGACAATGACAGCCACTCGGGGGGCAGGGAAAGGGAGGAGATCTTCATGACCATGGACTGTTCGTTGTTCCTCCCCCTGACTCTGATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123692 lncRNA upstream 68971 14126621 ~ 14152625 (+) True G99093
TU123691 lncRNA upstream 84921 14126621 ~ 14136675 (+) False G99093
TU123655 lncRNA upstream 112276 14063929 ~ 14109320 (+) True G99070
TU123661 lncRNA upstream 122459 14096945 ~ 14099137 (+) False G99074
TU123660 lncRNA upstream 123658 14096945 ~ 14097938 (+) False G99074
TU123727 lncRNA downstream 36717 14271381 ~ 14425466 (+) True G99120
TU123732 lncRNA downstream 81736 14316400 ~ 14324233 (+) True G99125
TU123743 lncRNA downstream 151469 14386133 ~ 14387285 (+) True G99136
TU123750 lncRNA downstream 153756 14388420 ~ 14390665 (+) True G99138
TU123762 lncRNA downstream 175098 14409762 ~ 14448040 (+) True G99149
AMCG00015619 mRNA upstream 74626 14141122 ~ 14146970 (+) True AMCG00015619
AMCG00015618 mRNA upstream 108671 14104328 ~ 14112925 (+) True AMCG00015618
AMCG00015617 mRNA upstream 125329 14089967 ~ 14096267 (+) True AMCG00015617
AMCG00015616 mRNA upstream 228507 13985543 ~ 13993089 (+) True AMCG00015616
AMCG00015608 mRNA upstream 336930 13882610 ~ 13884666 (+) False AMCG00015608
AMCG00015629 mRNA downstream 218853 14453517 ~ 14456893 (+) True AMCG00015629
AMCG00015630 mRNA downstream 227996 14462660 ~ 14467684 (+) True AMCG00015630
AMCG00015636 mRNA downstream 267090 14501754 ~ 14502659 (+) True AMCG00015636
AMCG00015639 mRNA downstream 287733 14522397 ~ 14538432 (+) True AMCG00015639
AMCG00015637 mRNA downstream 323085 14557749 ~ 14573035 (+) True AMCG00015637
TU123659 other upstream 120741 14096945 ~ 14100855 (+) True G99074
TU123399 other upstream 608304 13583970 ~ 13613292 (+) False AMCG00015602
TU123395 other upstream 628226 13576196 ~ 13593370 (+) True AMCG00015602
TU123364 other upstream 774317 13445525 ~ 13447279 (+) True G98884
TU123359 other upstream 785894 13433051 ~ 13435702 (+) False AMCG00015591
TU124082 other downstream 814259 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 1079372 15314036 ~ 15314414 (+) True G99475
TU124310 other downstream 1562286 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 1896380 16131044 ~ 16131387 (+) True G99624
TU124723 other downstream 2863795 17098459 ~ 17131749 (+) False AMCG00015703

Expression Profile