RNA id: TU123831


Basic Information

Item Value
RNA id TU123831
length 837
RNA type TUCP
GC content 0.56
exon number 8
gene id AMCG00015628
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14294968 ~ 14336329 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGGAGCTCTGCTCAAAGGGAGACCTGTTCCCGCTGACCAATGCCTATGAGCCCGAGCGCTTCAGACCCCTGTGCCTCGTCACTAAGACAGTGTCAATGTTCAAATCTCCGGAGTTCTGTGCCACCGAGTACAAAGTGACCAACCTGGTGAGGAAACCGCCCAAAAAGGAGCTAGTCCCAAAGACCATGGACTTGCCCACGGTGACAGCAGGCAGTGCCCTCGAGCTGGGGGGCAGTGCTGGGGCTGGGCTGGGGGCTGGCATTGTTGCTGTGGATGGGTCCCTGGGCATCAAGGGGTCCCACCAGTCTGGTGTGGAGGATGCTGAATTATATAAGACGGTCATCACCAAGTCAGACTTGAGAGCGTTCCTGGAGAGCAGTGGGGGTATTAACATGGACAGGCCCATGCCCAGGGAGCTGCTGGACTCGGACGGGGTGTGTGTGGTGCTGGAGAACGTTATAACCAGGAAGCAGCTGACCATGAAGGACTGTAGCAGCAGCGGGGCCAACCTGGGGGTGAAAGCCGGGCCCGTCGGGAATATGGCACTGTCAGGGTCGAGCAATAAGTCACACATAGTGTGTGTGAAGGCTGGCACTGTGCTGGCCTACAAGGTGTGTGAGATGTCGGTGAGGCCGGACGGCAGTGTGGAACTACTGGTGCTCTCCAAGGACAAAACCTCCTTCGTTCAGAAAGAAATCCAAGACCTCCCCAAGGAGATCACCCTGATCAGTGAAAAAGCAAAAGAACTTCAAGAGCTCCCCAGAGAGAAAAGCCTCCCCAGAGGGAAAGAACTTCAAGAGCTGTCCAAAGAGAAAAGCCTCCCCAGAGAGAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123834 lncRNA downstream 5451 14294968 ~ 14320716 (-) False AMCG00015628
TU123832 lncRNA downstream 5451 14319467 ~ 14320716 (-) True AMCG00015628
TU123777 lncRNA downstream 107383 14062419 ~ 14218784 (-) True G99162
TU123789 lncRNA downstream 219722 14105454 ~ 14106445 (-) True G99167
TU123784 lncRNA downstream 234352 14090037 ~ 14091815 (-) True G99165
TU123859 lncRNA upstream 123533 14458465 ~ 14464160 (-) True G99217
TU123968 lncRNA upstream 167832 14502764 ~ 14503911 (-) False AMCG00015640
TU123979 lncRNA upstream 203739 14538671 ~ 14603977 (-) True G99296
TU123963 lncRNA upstream 208029 14542961 ~ 14611055 (-) False G99289
TU123962 lncRNA upstream 214539 14549471 ~ 14624486 (-) True G99289
AMCG00015627 mRNA downstream 52799 14256825 ~ 14273368 (-) True AMCG00015627
AMCG00015622 mRNA downstream 153568 14165698 ~ 14172599 (-) True AMCG00015622
AMCG00015624 mRNA downstream 172023 14147522 ~ 14154144 (-) True AMCG00015624
AMCG00015621 mRNA downstream 197803 14122466 ~ 14128364 (-) True AMCG00015621
AMCG00015620 mRNA downstream 207517 14113994 ~ 14118650 (-) True AMCG00015620
AMCG00015626 mRNA upstream 41823 14376755 ~ 14388739 (-) True AMCG00015626
AMCG00015633 mRNA upstream 60833 14395765 ~ 14415538 (-) True AMCG00015633
AMCG00015631 mRNA upstream 85822 14420754 ~ 14433707 (-) True AMCG00015631
AMCG00015634 mRNA upstream 101546 14436478 ~ 14444158 (-) True AMCG00015634
AMCG00015632 mRNA upstream 110421 14445353 ~ 14446018 (-) True AMCG00015632
TU123617 other downstream 461429 13841229 ~ 13864738 (-) False AMCG00015612
TU123618 other downstream 461429 13841229 ~ 13864738 (-) True AMCG00015612
TU123619 other downstream 461429 13841229 ~ 13864738 (-) False AMCG00015612
TU123543 other downstream 587048 13671315 ~ 13739119 (-) True AMCG00015606
TU123499 other downstream 866378 13458127 ~ 13459789 (-) False AMCG00015598
TU123851 other upstream 112779 14447711 ~ 14456695 (-) True G99213
TU123958 other upstream 146262 14481194 ~ 14482908 (-) True G99286
TU123992 other upstream 235719 14570651 ~ 14573089 (-) True AMCG00015642
TU123993 other upstream 239434 14574366 ~ 14577633 (-) False AMCG00015642
TU124012 other upstream 355455 14690387 ~ 14738274 (-) False AMCG00015645

Expression Profile