RNA id: AMCG00015629


Basic Information

Item Value
RNA id AMCG00015629
length 1571
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00015629
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14453517 ~ 14456893 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGGTGAGTGTCTGATTGGGAATAAGCAGGATTTCCACCCCAATGTAGCAGTATATGGGGTCTCAAACTACGGTGGGCAGGCGGGGCGGGCTGGGCCGATGCAGGGACGGCGTTTAGAAACATGAATGTGACACATGACGGCCGTTTTCGCGTGTGACATTTGAGCTGTGCGAGTTCTTGAACAGTCCTTGACAGCATGAGCGGCTGCAGAGGCGTGATGTCCTCGACGTTGCGTGTTCTCTACTCTGTCTCCCGGTCAGAGTATGTCAATGCTCAGGAGGTGTCCACTGACATGAAGGGGGAGCATGCACTGCGCCGGTACCCGTCCGGAGAGGAGCGCTGCATCGCCTGCAAGCTGTGTGAGGCAGTGTGTCCCGCCCAGgCGATCACCATCGAGGCCGAGCCGCGCTCTGATGGCAGCCGGCGGACGACGCGCTACGACATCGACATGACCAAGTGTATCTACTGCGGCTTCTGCCAGGAGGCCTGCCCCGTGGATGCCATTgtggagggcccAAATTTCGAGTTCTCCACAGAGACCCACGAGGAGCTTCTCTACAACAAGGAGAAGCTGCTGAACAATGGAGACAAGTGGGAGGCCGAGATCGCAGCCAACATACAGGCTGACTACCTGTACAGATAGACAcatgctgggggggggggtgtacgGGTCCAGATGGTGGTGGTCCTCTCCTAGCCCTGGACGGCGATGTCATTCTCTGCGTTTGTTTAGTCGATTCCCGTTCCCTAAGCCATCGGCTAGTGTTTGTAGCCCATTGGTGGCAAGGAAACTGTCCACTGTCCTCAGCACCTGGAGCTCCTGCTGAAACACTGACCCAGAGAGAGGGCCTGCACACATCCCAGCCGACTGGACTGAGCAAGCGAGGGACCGAgtgagggtggggtggggtggggttggtGGTCTTGTGTGTGAAAACTTTGGGACCAGTTTCTAtccattgatttctatggagAGGCAAGCTGAAGGTGTACACCAGCAATCACTAGgagacactcacagacacagactgacagacacactcacacacagacgcacacacctGGCTTGACTCGGTTCAATTCACTGGGATCTAAAAATTCCTCATTGTGAACAaactactctctctctcactctctccctcgctccctctctctgtcactctgtccCTCCCTTGCTCCCTCGCTCCCCCTTTGTCACTGTCCCGCCCCCacaggctgtgtgtgtcagtgctcaATGCTGAGCCTGTAGGGAATCTCCACTGAGTTCTCCCAGGCGGACTCCTGAACCCTGTACAAAAATCCAGACTTGTAGAAATGAAAtataatcttaaataaataaataaaaccattcattAAAATCTTCTCCCAGAAAGCGTGTCCGTTATTTCATTGGAACCTGATGGGTTTTATTTAGTTCCAGCTGATGTGCTGTGCTCTGTCTGTAGGGGGTGCGGTTTCTCCACTTTCTTGTGATGCACTTCCTTCTCCGTCTAATGCTATTCCCACTAAAGTATAGGTCAGAATTCAGTTAATGtccccttgtgtgtgtgtgtgtgtgtgtcagtgtcag

Function

GO: NA

KEGG:

id description
K00338 nuoI; NADH-quinone oxidoreductase subunit I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123762 lncRNA upstream 5477 14409762 ~ 14448040 (+) True G99149
TU123748 lncRNA upstream 9375 14441491 ~ 14444142 (+) True G99137
TU123727 lncRNA upstream 28051 14271381 ~ 14425466 (+) True G99120
TU123750 lncRNA upstream 62852 14388420 ~ 14390665 (+) True G99138
TU123743 lncRNA upstream 66232 14386133 ~ 14387285 (+) True G99136
TU123873 lncRNA downstream 36121 14493014 ~ 14495627 (+) True G99229
TU123884 lncRNA downstream 90104 14546997 ~ 14550448 (+) True G99232
TU123914 lncRNA downstream 161358 14618251 ~ 14618610 (+) True G99259
TU124030 lncRNA downstream 319205 14776098 ~ 14776461 (+) True G99325
TU124052 lncRNA downstream 422863 14879756 ~ 14880075 (+) True G99342
AMCG00015625 mRNA upstream 218853 14221596 ~ 14234664 (+) True AMCG00015625
AMCG00015619 mRNA upstream 306547 14141122 ~ 14146970 (+) True AMCG00015619
AMCG00015618 mRNA upstream 340592 14104328 ~ 14112925 (+) True AMCG00015618
AMCG00015617 mRNA upstream 357250 14089967 ~ 14096267 (+) True AMCG00015617
AMCG00015616 mRNA upstream 460428 13985543 ~ 13993089 (+) True AMCG00015616
AMCG00015630 mRNA downstream 5767 14462660 ~ 14467684 (+) True AMCG00015630
AMCG00015636 mRNA downstream 44861 14501754 ~ 14502659 (+) True AMCG00015636
AMCG00015639 mRNA downstream 65504 14522397 ~ 14538432 (+) True AMCG00015639
AMCG00015637 mRNA downstream 100856 14557749 ~ 14573035 (+) True AMCG00015637
AMCG00015638 mRNA downstream 124056 14580949 ~ 14582350 (+) True AMCG00015638
TU123659 other upstream 352662 14096945 ~ 14100855 (+) True G99074
TU123399 other upstream 840225 13583970 ~ 13613292 (+) False AMCG00015602
TU123395 other upstream 860147 13576196 ~ 13593370 (+) True AMCG00015602
TU123364 other upstream 1006238 13445525 ~ 13447279 (+) True G98884
TU123359 other upstream 1017815 13433051 ~ 13435702 (+) False AMCG00015591
TU124082 other downstream 592030 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 857143 15314036 ~ 15314414 (+) True G99475
TU124310 other downstream 1340057 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 1674151 16131044 ~ 16131387 (+) True G99624
TU124723 other downstream 2641566 17098459 ~ 17131749 (+) False AMCG00015703

Expression Profile