RNA id: AMCG00015630


Basic Information

Item Value
RNA id AMCG00015630
length 1878
RNA type mRNA
GC content 0.58
exon number 6
gene id AMCG00015630
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14462660 ~ 14467684 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCAACAACAAGGATCTGTACCAGactCTGGACTCCTCCTGTGCTCTGCAGTGCTGGGTTGATGTGATAGAGAGGGACATTGACAGACAGTTCCCCTTCCATGAGATGTTCTTGTCCAGAGATGGTCACGGGTACCACTGCCTCTCCCACTaccactcactctctcactgtcACTCTCTTACTTGCTCTCTGTCACTGCCACTCTTTCAGTGTCACTCTCACTTTGTAAAAGTACACCTGCGGAAACACGGGGTGGAGCCGCTCATGTACCTGACCGACTGGCTGATGTGTATGTACAGCCGGACACTGCCCTTCAACACACTGCTGCGCATCTGGGACCTTTTCTTCTGtgaggGGGTGAAGGTGCTGTTCAGGGTGGCAGTGGTTCTGGTGCGGATGGCTCTGGGCTCATCTGAGAAAACTAAGGAATGTGACGGACAGATGGAGACGTTGGAGCAACTGCGCACGATAAACGTCAAGAACCTGCACGAGGACGCCTTCATTGAGGAGGTGTGTGCGGTGTCTGTCTCTGAGAGGGAGGTGCAGCGGGAGACGGAGAAGGAGCTGGAGGCCTGGCGGAGTGAGAAACCGCACTCGCCCTTCGACCCCAGGGGGCGTTGCCACGGCTACCGGGCCGCTTGGGAGCAGGGactgcaggaggaggaggagaggaaaaggAGGGAGACCGAGAGTGGGAACCTTACCTTGCCCCACTCCCCCGCCCGCcaaccctcctcctcctcttctgggGGGTTAAAGAAACCGAGAGGGGGGAGCCGGAGTCAGCTGGACTTCCTGAGAGCAGGAGTTCGgaaagagaggagggagggaagaaaagACGAGTGCAGAGAGGGAAGGGAGGGGGAtagggagaaggagggagagggaggcggagagaggagagagttcAGTACAGAGGAGTGTggcatgaagagagagaaggagagggagggagagaaggatggAGAAAAGGAGAAATCAGAGTGGGTGGAGGGGAGAGAGTCCAAGACACAGGAGTGTGCAAGAAAGGGAGAGGGGCCAGGAGAAGGAGTGAAAGAAAggggggagggacagagagaatccAGGACAGAAGAATGCAGAGCAAGGGAAGAGCCTGGGAAGGAGGAGAAGGATGGTGGAGCGacagaagagagaggagagaatggccagaaggagggagagggggagatggaggggGACAGAGGTGAAAGGgtagagggagaggcagagaaaggAAGAGACAGTGAGTTTAAGAGTGGAGGAGAGGCgggagaaagtgagagagaaggagagggactgagagagggagaggtggacCTGCCTGATGGTGACGAggtggagagagaaagggaaggagTAGGCATGCCCAgtggtggagagggagagggacagactcagagagggggagagggagagagaccgGAAGAGGTGGCACTGCCCAGTaatggagaggcagagagagagggggagggagaaagcTGCCTCCGTGTGGAGGCAGTGTGTGGTGAAGCCAGGGAGGCTGGGAGGCCAGGAGAGAGACACTCATGGAGTAGCTTTGGGGAAAGGGGGAAGGGTagcgggagagagggagggagagggaggagtgcGTCCATGTCCATGCTGGCTGGGAGAACGTCGTTAGCTGggggaggagatggagggagagagagcgggagagggaAGGACGGAATGGCGGAGGTGGGCGAGAGGAGCACGAGAGAAGGAACACAGGAGAAAGGAGAGTGGGAGGATAGAAtaagggaggagggagaggaggagaagggagggctggtggagggagagaggactGCAGAACCGATGCACCCCCCAGCAACACAGACTTCTAACACGCTCGTCTCCATGGCGATCATGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123762 lncRNA upstream 14620 14409762 ~ 14448040 (+) True G99149
TU123748 lncRNA upstream 18518 14441491 ~ 14444142 (+) True G99137
TU123727 lncRNA upstream 37194 14271381 ~ 14425466 (+) True G99120
TU123873 lncRNA downstream 25330 14493014 ~ 14495627 (+) True G99229
TU123884 lncRNA downstream 79313 14546997 ~ 14550448 (+) True G99232
TU123914 lncRNA downstream 150567 14618251 ~ 14618610 (+) True G99259
TU124030 lncRNA downstream 308414 14776098 ~ 14776461 (+) True G99325
TU124052 lncRNA downstream 412072 14879756 ~ 14880075 (+) True G99342
AMCG00015629 mRNA upstream 5767 14453517 ~ 14456893 (+) True AMCG00015629
AMCG00015625 mRNA upstream 227996 14221596 ~ 14234664 (+) True AMCG00015625
AMCG00015619 mRNA upstream 315690 14141122 ~ 14146970 (+) True AMCG00015619
AMCG00015618 mRNA upstream 349735 14104328 ~ 14112925 (+) True AMCG00015618
AMCG00015617 mRNA upstream 366393 14089967 ~ 14096267 (+) True AMCG00015617
AMCG00015636 mRNA downstream 34070 14501754 ~ 14502659 (+) True AMCG00015636
AMCG00015639 mRNA downstream 54713 14522397 ~ 14538432 (+) True AMCG00015639
AMCG00015637 mRNA downstream 90065 14557749 ~ 14573035 (+) True AMCG00015637
AMCG00015638 mRNA downstream 113265 14580949 ~ 14582350 (+) True AMCG00015638
AMCG00015643 mRNA downstream 142195 14609879 ~ 14616756 (+) True AMCG00015643
TU123659 other upstream 361805 14096945 ~ 14100855 (+) True G99074
TU123399 other upstream 849368 13583970 ~ 13613292 (+) False AMCG00015602
TU123395 other upstream 869290 13576196 ~ 13593370 (+) True AMCG00015602
TU123364 other upstream 1015381 13445525 ~ 13447279 (+) True G98884
TU123359 other upstream 1026958 13433051 ~ 13435702 (+) False AMCG00015591
TU124082 other downstream 581239 15048923 ~ 15179850 (+) False AMCG00015657
TU124222 other downstream 846352 15314036 ~ 15314414 (+) True G99475
TU124310 other downstream 1329266 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 1663360 16131044 ~ 16131387 (+) True G99624
TU124723 other downstream 2630775 17098459 ~ 17131749 (+) False AMCG00015703

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000053_05675892_05686424.mRNA True 2468 mRNA 0.46 8 CI01000053 5674979 ~ 5686424 (-)