RNA id: AMCG00015657


Basic Information

Item Value
RNA id AMCG00015657
length 2235
RNA type mRNA
GC content 0.58
exon number 13
gene id AMCG00015657
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 15048923 ~ 15200978 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCCTACACTGTCACCGCGACCAGAGGCGGCACCGCCACCCGAGTCCCCCGCCCGGCTGCCAGTCCAGCCGCCACACAGCAGAGGCGCCGGCGCGGCCATGGCCCTGTCCGCAGCGAGCCTCCTGCTGCTTCTGGCGGCGAGCGGTGAGTCTCAGCCCCGGCGACAGAGCACTGCTGCCCGGCTCTCTGCGCGGCGCTGTGGCGCCGCTGGGACCTTGATGGAGCAGCGCCGACtggctctgtctgtctcttacGTCCCCTTTGATCTGCTCTGTGTGGAGACGCTGCGCAGTTGCATCATCTCGTCTTCCCCTCAGTCTGCAGTGAGGCTGCAGGGCGCTGTGGGGGGGGCAGTCTCTCTCCCAGCCCCAGTGTTAGACACAGGGCTCTTGAGATACAATGTCAATGTTGCACTGGTGTTCAAGCGGGAACCCCCGCTCTGCCACTCGGGCTGGGAATGTGACCGACTCTCCCACAGTGCCCTTCAGCTGCCTCTGTGCAGACTGGGCAGCAGCTGGACCTGGAGCTGTCACGAACAGAGAGAAAGCGGCTGTGAGCTGGTGTCCTCTGACAATAGGCTGTGTCCATCTCTTGTCCAGTCTGAGAGGCAGCTGAAAGCCACTGTTGGAGAGACTGTCAGTTTCCCAGCCCAAGTGACAACTCAGGGTTTCCTCAAGTACAGAGGAACTGAAACTATGGCAGCAGTGATCAATGGGCAGCTCATGCCTGTGGAGAGGTTCAAAGGGAAAGTGTTCAGAAGGACCCAGGTCAGTCTGCTGTGCTCTTTCCTGTGCTCTGTGTCCAATGGGAGAGAGGTGACACTGTCCTGgtacagagagggggaggagaagcCCCTGAACCACAGCAGCTCCCCTGATCTCAACACCAACCTGACTCTCCCTCTGGAGACAGAAGGACTCTCTCACTCCTACAGCTGTGTGGCCACCAACCCCATCAGCACTGAGAGAGTCACATTGATCTGCTCTGTGCATCTGCCCGTCTTCCCCTCAGTCTGCAGTGAGGCTACAGGGCGCTGTGGGGGGGCAGTCTCTCTCCCAGCCCCAGTGTTAGACTCAGGGTTCTTGATATATGGAGGCAGAAATATTGGAGCAGTAGTCAAAGGGCAGAGAGCCCCTGCACTGGAGGACAGCTTCAGAGGGACAGTGCTCTGGGACAGCAAGACTGGACTCTTTCAGATCACAGGCCTGGACACACAGGACACTGGGGAGTACACAGTGCAGAACACAGGACAGCAGAAGACAGTCACCGTGTTCCAGCTGACAGtgtacagtgagtgtgtgttactCACAGAGCGGAGTTACGGTCAGTGCGGTGTGAGCTGGACTGAGTCCACGAGCCACACAATTCAAGTCAAGATTAAGAACGTCATGAGGTTTAAATCCCAGCTGTGCACCACAAGACGCATCAgAGCAATAGGTCACCTGGGTCAGGCTGCCAGGGATACCAGAAAAATTGACGCCAGGGCCACAGCGACGGGCAGAGAGGAGGGCAGCCTGCCTGAAGAGCCACAGAAACATGGGTCCAGTTTTGCGTGTATTTTCATATgTACGAAACTGTGCAAGAAGGTGAGTGTCACATTCCAGTACCTGGAGGTCGGCTGCCAGGTAGAGCTGAAGGAAGTCAAGCCAGAGTTGGTGGCATTTAAACCGATGCTGGACTACACCTTACTGGAGCTGAAGTCCAAGGCTGACCTCTCAGCATCTCTGCTGCGGAGATTCGACCACCCTCCGACCCATCTGTGTGGATCACCCGTGTTGGACGAGTATGGGCGACTGGTGGGAATGCACACAGGGGGGTACACCTATAAGCCCAAGGCCAAGGGCAAAACCCAGAGCGTCATCAAGGCTGCGGAGCATGCGAGGGAAAGGACAAGGGGAAGCGAGACAGACAGAAGAGACTACCTCTGCATTCTGCTGAGTTTGGTGGAGACGGAGTTTGACACTGGGGAGCTGGGGGCCGTGCTGACCGAGCTGGCCAGTACTGAAGAGTTCCAGGGGGGGCTGAAGGAGCTGTGTGTAGGGATGAACTGGGGTGAAAAGGGAAGTTGGCTGCCAGGAGATGGGGTGACAAGTGTGGAAAGCTTCCTTATGTTTCTCAAGAGATGTGCTGAGATggggaaggaaggagggagaggggagcaggaggagggagATCATGTGACTGAGGAAATGGACCAGTCTCCCGAGGAGCCCATGCTTTTGGAGAACAGTGGC

Function

GO: NA

KEGG:

id description
ko04072 Phospholipase D signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124058 lncRNA upstream 1076 15052397 ~ 15161865 (+) True G99348
TU124060 lncRNA upstream 255698 14905607 ~ 14907243 (+) True G99350
TU124061 lncRNA upstream 255698 14905607 ~ 14907243 (+) False G99350
TU124052 lncRNA upstream 282866 14879756 ~ 14880075 (+) True G99342
TU124030 lncRNA upstream 386480 14776098 ~ 14776461 (+) True G99325
TU124108 lncRNA downstream 47271 15248249 ~ 15271657 (+) True G99384
TU124361 lncRNA downstream 701473 15902451 ~ 15959723 (+) True G99566
TU124476 lncRNA downstream 1008465 16209443 ~ 16209643 (+) True G99644
TU124494 lncRNA downstream 1094847 16295825 ~ 16296030 (+) True G99662
TU124530 lncRNA downstream 1239334 16440312 ~ 16457842 (+) True AMCG00015682
AMCG00015654 mRNA upstream 6688 15138046 ~ 15156253 (+) True AMCG00015654
AMCG00015650 mRNA upstream 153432 14992880 ~ 15009509 (+) True AMCG00015650
AMCG00015653 mRNA upstream 194129 14966603 ~ 14968812 (+) True AMCG00015653
AMCG00015648 mRNA upstream 271998 14830842 ~ 14890943 (+) True AMCG00015648
AMCG00015646 mRNA upstream 355543 14720074 ~ 14807398 (+) True AMCG00015646
AMCG00015656 mRNA downstream 4612 15205590 ~ 15214257 (+) True AMCG00015656
AMCG00015661 mRNA downstream 59063 15260041 ~ 15269845 (+) True AMCG00015661
AMCG00015663 mRNA downstream 112575 15313553 ~ 15348690 (+) True AMCG00015663
AMCG00015665 mRNA downstream 510214 15711192 ~ 15728592 (+) True AMCG00015665
AMCG00015668 mRNA downstream 627693 15828671 ~ 15902686 (+) True AMCG00015668
TU123659 other upstream 1062086 14096945 ~ 14100855 (+) True G99074
TU123399 other upstream 1549649 13583970 ~ 13613292 (+) False AMCG00015602
TU123395 other upstream 1569571 13576196 ~ 13593370 (+) True AMCG00015602
TU123364 other upstream 1715662 13445525 ~ 13447279 (+) True G98884
TU123359 other upstream 1727239 13433051 ~ 13435702 (+) False AMCG00015591
TU124222 other downstream 113058 15314036 ~ 15314414 (+) True G99475
TU124310 other downstream 595972 15796950 ~ 15801634 (+) True G99541
TU124453 other downstream 930066 16131044 ~ 16131387 (+) True G99624
TU124723 other downstream 1897481 17098459 ~ 17131749 (+) False AMCG00015703
TU124919 other downstream 3119078 18320056 ~ 18325904 (+) True G100007

Expression Profile