RNA id: AMCG00015678


Basic Information

Item Value
RNA id AMCG00015678
length 2295
RNA type mRNA
GC content 0.58
exon number 9
gene id AMCG00015678
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16453984 ~ 16461379 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaatacacaaaacaattactgtattttttcataagtttaaaataacaattcaaaacaagatttttattattaatcattattaataattatgtacGTCACGTCAAACACATATGCTTAAAGAACTACGCTTCCCACGTGTTTTACTGGCCAGCCAGCCAGGGGGCACTTCAGAGAGACATTTTATTCGTGTCTGGGAGTTGTAGTTTTTCTTATACTCCCCAAGGCAGGTCCTCGCCGCTAAAACTACACTCCCGTCAGGCCACGCAATTGCGAGACTGTTTGGGTAGAACGAGGGGGggacttgtgtgttttttccgaGCGTTCGGTTCTTAAAGGAGAAGCGACACAAAGACAGGCCGCCCGACTGTACTGAGGCGCCCGGGCACTTAACGGGGATCTATCGCTTTAAGACTGCAGAAAAACGGGTATCtggggctttaaaaaaataataataacaataataataaccaaaaaaaattaacaacatCTTTAAAACTCTCtcacaaaacatacaaacacgGGCGGGATTTACAATTACTGCAGTGGTGGTTACAGAGCAGGAGAGGGCgaatctatatttatattaatacagaGTTATTCGGGTCTGTACAAATGTGTGCAAGCGGGTCGTAGAAGCGCACTCTTGcgaaatcaataatacattggAAAAAGATCATAGGTGTTCAAGGCCGCCCCAGAGGGAGCGGGGAGCGGGGCTCATGAACTCTGTTTCCACCAGGGCTGGGGGCGCTGGGGCCGGGGGAGGCTGCGAGCGATCACAGGCCGCTCTGCCCGGGGACCCCAGTCCAGCACCGGCCCAGGGCAGAGTGTTGCGAGAGCGGGGCGCCGGCCGACTCCACGCCTCGGCTGCGGTCACGGCCTCGGACGAGCCTGGGTCCGGACGGGTGCTGAGAGAGCGGACCAGCCGGGGGGTGGCTGTGTCGGGAGAGAAGAGGGCCGCCGACAGCGGGGCCCAGGCAGCCGCCCAGGCCCAGGCCGCTGACGGACCTGCTGCGGCCGCCGCTGCTCGCCGGAGGAAGGCCGAGTACCCGCGCCGCAGGAGGAACGCGGGAGCCCGGGCAGAGAACTCGGGAGAGACCCAGGCTGAGAGAGGCCCAGCGGAGCGttctgAAGACAAGCAAGACTCTACAGAGAAAGtAGAGgactctctccctcgctctcgtCCCTCTCGGACCCGCCGCCCTCGCGCCCCCCCACGGCACAGAGAGCCcctcccccgcagccccccagCACTGGTCTGCAAAGCTGAGCCTGATCCAGAGACTGCGGGATATGGaggcACAGTTGAGGATCTGCTGTCCAGAGCAGGAGTGAGtgaggaggaggatgatGTGGTGATCAGTGAGGAAGACCCCCCCTTCAGAGACGACCCCAAAGACCAGAACTACAaaccagagacagagagGGACCCCCCCAAGCCTCGCCGGCGGCCCCCCAAGACTaaggaggagaggaggccaCCTGAGAtcaagacagagggagagaaggagggagagagggaacgAGAGAGGCAAGGAGAGATCGACGTGAAGCAGGAGAACGAGTTTGGGGAGGAGAGCGAGCCACCCAGGAagaGGGGGCGGCGGCGGAAGGATGACAAGAGTCCTCGTCTTCCCAAGAGACGGTACAAGGCCTCTCTGAATTGGCACATGAAGAAGCATGACGCCGATGCCTCGTACCGCTTCTCCTGCAGCCTGTGCGGCAAGCGCTTCGAGAAAAAGGACAGTGTGGTGGCGCACAAGGCCAAGAGCCACCCGGAGGTGCTCATCGCCGAGGCCCTAGCCGCCAATGCCGGGGCGCTCATCACCGGGGGTGGGGCCGAGATGGAGCTCCTGCAGGCGGGCGGAGCAGCAGGGGCAGAGGGGGCAGaggggcagggtggggggggctgtaGTGGTGCCCTGGCCCAGGCTGGGCTGAGCGACCCGGCCGGTGCTATGTCTGTGGGAGTGGGGGACCTGAATCTGGAGGCCAGTCTGGATCCCAGTCCGAGTGTGAACCCCCCTCCCACTGCCAGTCTGGATCCCAGTGCACTGAGTGTGAATAGTCTGGGTCTACAGCAACAAGAGCAACAtcagcagcatcagcagcagcagcagcagcagcaagagcTCAACTTACAACTAGAgAGCAGATACAGATTCACATTCACATGCAAGTgccccctcctgctcctgccaCCTGCACTGCTACTGCTGTCTCCCCGCAGCCTCCACTGCAggccctctctctccagcagggGGAGGCAGGGGAGAACGCAGGAGGAGGAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124494 lncRNA upstream 157954 16295825 ~ 16296030 (+) True G99662
TU124476 lncRNA upstream 244341 16209443 ~ 16209643 (+) True G99644
TU124361 lncRNA upstream 494261 15902451 ~ 15959723 (+) True G99566
TU124108 lncRNA upstream 1182327 15248249 ~ 15271657 (+) True G99384
TU124097 lncRNA upstream 1203082 15191669 ~ 15250902 (+) False G99375
TU124548 lncRNA downstream 33417 16494796 ~ 16496252 (+) False AMCG00015687
TU124547 lncRNA downstream 34918 16496297 ~ 16498531 (+) True AMCG00015687
TU124611 lncRNA downstream 74706 16536085 ~ 16536332 (+) True G99742
TU124614 lncRNA downstream 76858 16538237 ~ 16539381 (+) True G99745
TU124642 lncRNA downstream 137100 16598479 ~ 16599419 (+) True G99771
AMCG00015682 mRNA upstream 13549 16433443 ~ 16440435 (+) False AMCG00015682
AMCG00015679 mRNA upstream 20607 16420396 ~ 16433377 (+) True AMCG00015679
AMCG00015674 mRNA upstream 341446 16110567 ~ 16112538 (+) True AMCG00015674
AMCG00015675 mRNA upstream 387467 16060344 ~ 16066517 (+) True AMCG00015675
AMCG00015669 mRNA upstream 396189 16054341 ~ 16057795 (+) True AMCG00015669
AMCG00015684 mRNA downstream 19969 16481348 ~ 16483888 (+) True AMCG00015684
AMCG00015687 mRNA downstream 33313 16494692 ~ 16498524 (+) False AMCG00015687
AMCG00015685 mRNA downstream 38318 16499697 ~ 16502783 (+) True AMCG00015685
AMCG00015689 mRNA downstream 48318 16509697 ~ 16512290 (+) True AMCG00015689
AMCG00015688 mRNA downstream 55517 16516896 ~ 16522881 (+) True AMCG00015688
TU124453 other upstream 322597 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 652350 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 1139570 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 1274134 15048923 ~ 15179850 (+) False AMCG00015657
TU123659 other upstream 2353129 14096945 ~ 14100855 (+) True G99074
TU124723 other downstream 637080 17098459 ~ 17131749 (+) False AMCG00015703
TU124919 other downstream 1858677 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 2283508 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 3806028 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 6218831 22680210 ~ 22680773 (+) False AMCG00015796

Expression Profile