RNA id: AMCG00015679


Basic Information

Item Value
RNA id AMCG00015679
length 1873
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00015679
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16420396 ~ 16433377 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagacacacacgcacagacgcATGCACACGATGTCTGAGCTGCTTCTGAACACGCTGGTGTATTAggcatgattatgattattgaaGCTGCTGTACCAGTCAGACCTGTTGTGATCGCTCAGCCGCCACCGCAGCTCAGAGGACACGGAACAGAACAACAGACAAGAGACTCaaggaaaacagagagagagacaactaGAAAGTGTTATAGTTTTTAATTACCTGGCAAGGTGACTGAAGTGAAGACGACACTGCACTAGAGAAGACAGGCAATGGGCAACCAAGTTGAATACCCAATGAACAATACAAACCTGACCATCAAAACCTGACCCAACCACAGTCACACAACAACCACAGcaacagcacagacagacacaccttGGCCATGGCCACCCTGCCGCGTGACCAGTGTGTTCTGGAGGAGATGCTGCGTTGTGTGGTGTGTCTTGACCTCTACACTGACCCGGTCACCCTGCCCTGTGGACACAACTTCTGCCGCCACTGCATCCGGCAATACTGGAGTGGAAGTGGGAATGGGGCAACCTGTCCCCAGTGCAGAGAGACTTTCAGGCACCAGCCATCACTCAAGAAGAACCACAGCCTGGATCACATAGTGGAGGAGCTGAGGGACCCTCGAcgagtgggaAAGGGAGTGAGAGTGGGAGAAGTGGTGGTGGAGACCCTGCCGGTCTGTGACTCATGTCCAGCTCCTGTAAAGTCCCAGGTTCTGGTGTcctgctctgtgtgtctcctgtctctctgtgtcctcCACGCACAACAGCACAGAGACAGCCTGGTCTTCAGAGGACACAGACTGAGGGACATCAGAGGAGGAaagggacagacacagacacagacacagAAAATGAATGACCTGCTGAAGAAAATAGAGGAGGGGATCATAGAGAGACTGAGTCTGCTGGAGTCTCTGAGCCGAGCCACTGAGACAGCCAGACTGTCTGTGGAGGAAGAGAAAGGAGGATGCATTCAAGCACTGGAACAGCTAGAGGCGGGGGTGGCAACACTTAGGGAACAGCTGGGATCACTCATtgaggagatggagggagagagggagagggaggctggAGAGATGAGACAGAGACTTGAGACAGAGATGGAGGAGCTGCGAGAGAGGGGCAGGAAGCTGAAGGAACTGCAGTCAGGGGACAGTCTacagggtgtccagtcagtcagccCCCCCCCTGTCTGTCAGCTGGTCAGTCTGGACTATGTCAGCATGTATGCAACGGATGTCCGTGTTGACCCAGCATCGGCCCACCCCTGCCTCATAGTCTCTCCGGACGGGAAGAGCCTCCGGACTGGCCCCCGGCGCCAGCCcctgccccccagccccccagccccccagcccccactGCTTCGACCGTGTCGCGGGTTCACCAAGGGCTGCCACTactgggaggtggaggtgggcCACAAGAGGCTGTGGCGAGTGGGGCTGTTTCGGGGGGGGATCTCCAGGCAGGGGCCCATCCCAGAAGAGGGGTACTGGGTGCTGGAGGGAGGGGGGTGCGAGGAGAGAGAAGGcagtgggggggagagaggcaggggaaGTGGTGGAGTGGACTGTCGGTGGGAGAGTTTGGGTAGAGGAGAGagggcagaggaggaggaggaggaaggaaggGAGGGGAAGGGAGTGACGGTGACAGTGCTGGAGGGTCGAGGGCCCCTCCCTAGTGTGGTGGGTGTTTTTCTGGACCGGGACGGAGGGACCCTGGAGTTCTATGACTCAGAGATGGAGGGGGAGCCCCTGGCGAGGCTGGAGGGATGCTTCCAGAGTGGGGAGCCACTCTTCCCTCTCTTCTGCCCAGGAATGAAGGAGGACGGGGAATGGATGGTGATTCGgggatag

Function

GO:

id name namespace
GO:0004055 argininosuccinate synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124494 lncRNA upstream 124366 16295825 ~ 16296030 (+) True G99662
TU124476 lncRNA upstream 210753 16209443 ~ 16209643 (+) True G99644
TU124361 lncRNA upstream 460673 15902451 ~ 15959723 (+) True G99566
TU124108 lncRNA upstream 1148739 15248249 ~ 15271657 (+) True G99384
TU124096 lncRNA upstream 1167682 15191669 ~ 15252714 (+) True G99375
TU124530 lncRNA downstream 6935 16440312 ~ 16457842 (+) True AMCG00015682
TU124536 lncRNA downstream 25483 16458860 ~ 16504418 (+) True G99697
TU124537 lncRNA downstream 25483 16458860 ~ 16504418 (+) False G99697
TU124539 lncRNA downstream 25483 16458860 ~ 16504418 (+) False G99697
TU124548 lncRNA downstream 61419 16494796 ~ 16496252 (+) False AMCG00015687
AMCG00015674 mRNA upstream 307858 16110567 ~ 16112538 (+) True AMCG00015674
AMCG00015675 mRNA upstream 353879 16060344 ~ 16066517 (+) True AMCG00015675
AMCG00015669 mRNA upstream 362601 16054341 ~ 16057795 (+) True AMCG00015669
AMCG00015670 mRNA upstream 372762 16009036 ~ 16047634 (+) True AMCG00015670
AMCG00015671 mRNA upstream 434146 15962359 ~ 15986250 (+) True AMCG00015671
AMCG00015682 mRNA downstream 66 16433443 ~ 16440435 (+) False AMCG00015682
AMCG00015678 mRNA downstream 20607 16453984 ~ 16461379 (+) True AMCG00015678
AMCG00015684 mRNA downstream 47971 16481348 ~ 16483888 (+) True AMCG00015684
AMCG00015687 mRNA downstream 61315 16494692 ~ 16498524 (+) False AMCG00015687
AMCG00015685 mRNA downstream 66320 16499697 ~ 16502783 (+) True AMCG00015685
TU124453 other upstream 289009 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 618762 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 1105982 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 1240546 15048923 ~ 15179850 (+) False AMCG00015657
TU123659 other upstream 2319541 14096945 ~ 14100855 (+) True G99074
TU124723 other downstream 665082 17098459 ~ 17131749 (+) False AMCG00015703
TU124919 other downstream 1886679 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 2311510 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 3834030 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 6246833 22680210 ~ 22680773 (+) False AMCG00015796

Expression Profile