RNA id: TU124548



Basic Information


Item Value
RNA id TU124548
length 314
lncRNA type sense_over
GC content 0.53
exon number 2
gene id AMCG00015687
representative False

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16494692 ~ 16498531 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGTGAGCCTGGGCATGATCCAGACATCACTAGCAGAAGGAAAAGTTTTGGAAACAAAAGTTTTGAGGGAGTAAAACGGGCGGAATTTGAATGTCGGAAACTAGTGGAGAGTGAGCGGGCCTGGACTGCGGATGAGACGGAGAGCAGAGCCGTGGAGGAAGCAtgtctgactgtctgtgattggctgcctGGTTGCCTTGGTGTTAGAGGGAGGGGTACtcaaggggggagagagggtgggggcTTGTCAGAGTTGTCATGGCGACTCAGTTCTCGATTGATGATGCATTTTCATTGGACcccgaggaagaggag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU124530 lncRNA upstream 36954 16440312 ~ 16457842 (+) True AMCG00015682
TU124494 lncRNA upstream 198766 16295825 ~ 16296030 (+) True G99662
TU124476 lncRNA upstream 285153 16209443 ~ 16209643 (+) True G99644
TU124361 lncRNA upstream 535073 15902451 ~ 15959723 (+) True G99566
TU124108 lncRNA upstream 1223139 15248249 ~ 15271657 (+) True G99384
TU124547 lncRNA downstream 45 16496297 ~ 16498531 (+) True AMCG00015687
TU124611 lncRNA downstream 39833 16536085 ~ 16536332 (+) True G99742
TU124614 lncRNA downstream 41985 16538237 ~ 16539381 (+) True G99745
TU124642 lncRNA downstream 102227 16598479 ~ 16599419 (+) True G99771
TU124643 lncRNA downstream 103949 16600201 ~ 16602947 (+) True G99772
AMCG00015684 mRNA upstream 10908 16481348 ~ 16483888 (+) True AMCG00015684
AMCG00015678 mRNA upstream 33417 16453984 ~ 16461379 (+) True AMCG00015678
AMCG00015682 mRNA upstream 54361 16433443 ~ 16440435 (+) False AMCG00015682
AMCG00015679 mRNA upstream 61419 16420396 ~ 16433377 (+) True AMCG00015679
AMCG00015674 mRNA upstream 382258 16110567 ~ 16112538 (+) True AMCG00015674
AMCG00015685 mRNA downstream 3445 16499697 ~ 16502783 (+) True AMCG00015685
AMCG00015689 mRNA downstream 13445 16509697 ~ 16512290 (+) True AMCG00015689
AMCG00015688 mRNA downstream 20644 16516896 ~ 16522881 (+) True AMCG00015688
AMCG00015692 mRNA downstream 72196 16568448 ~ 16569251 (+) True AMCG00015692
AMCG00015686 mRNA downstream 75399 16571651 ~ 16575186 (+) True AMCG00015686
TU124453 other upstream 363409 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 693162 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 1180382 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 1314946 15048923 ~ 15179850 (+) False AMCG00015657
TU123659 other upstream 2393941 14096945 ~ 14100855 (+) True G99074
TU124723 other downstream 602207 17098459 ~ 17131749 (+) False AMCG00015703
TU124919 other downstream 1823804 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 2248635 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 3771155 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 6183958 22680210 ~ 22680773 (+) False AMCG00015796

Expression Profile